Detailed information NTG0227173

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: YKEC1_RS05670
• Genome accession: NZ_CP026473
• Coordinates: 1084237..1085229 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain KBN10P04869
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1079237..1090229

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
YKEC1_RS05640 (YKEC1_1037)	ispD	1079298..1080008 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
YKEC1_RS05645 (YKEC1_1038)	ispF	1080008..1080487 (+)	480	WP_001374730.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
YKEC1_RS05650 (YKEC1_1039)	truD	1080484..1081533 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
YKEC1_RS05655 (YKEC1_1040)	surE	1081514..1082275 (+)	762	WP_001374723.1	5'/3'-nucleotidase SurE	-
YKEC1_RS05660 (YKEC1_1041)	pcm	1082269..1082895 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
YKEC1_RS05665 (YKEC1_1042)	nlpD	1083080..1084174 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
YKEC1_RS05670 (YKEC1_1043)	rpoS	1084237..1085229 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
YKEC1_RS05675 (YKEC1_1044)	ygbN	1085323..1086687 (-)	1365	WP_000104456.1	GntP family transporter	-
YKEC1_RS05680 (YKEC1_1045)	ygbM	1086776..1087552 (-)	777	WP_001136918.1	HPr family phosphocarrier protein	-
YKEC1_RS05685 (YKEC1_1046)	ygbL	1087557..1088195 (-)	639	WP_001278994.1	aldolase	-
YKEC1_RS05690 (YKEC1_1047)	otnK	1088192..1089454 (-)	1263	WP_000590392.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=227173 YKEC1_RS05670 WP_000081550.1 1084237..1085229(+) (rpoS) [Escherichia coli strain KBN10P04869]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=227173 YKEC1_RS05670 WP_000081550.1 1084237..1085229(+) (rpoS) [Escherichia coli strain KBN10P04869]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715