Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   C3F40_RS27775 Genome accession   NZ_CP026399
Coordinates   5259793..5261217 (-) Length   474 a.a.
NCBI ID   WP_039022114.1    Uniprot ID   -
Organism   Escherichia coli strain ECONIH4     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5254793..5266217
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3F40_RS27745 (C3F40_27745) yeeZ 5254848..5255672 (+) 825 WP_000754758.1 SDR family oxidoreductase -
  C3F40_RS27750 (C3F40_27750) yeeY 5255718..5256647 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  C3F40_RS27755 (C3F40_27755) yoeI 5256862..5256924 (+) 63 WP_010723108.1 membrane protein YoeI -
  C3F40_RS27760 (C3F40_27760) plaP 5256914..5258272 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  C3F40_RS27765 (C3F40_27765) tsuA 5258451..5259509 (+) 1059 WP_000492312.1 thiosulfate utilization transporter TsuA/YeeE -
  C3F40_RS27770 (C3F40_27770) tsuB 5259523..5259750 (+) 228 WP_000985278.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  C3F40_RS27775 (C3F40_27775) sbcB 5259793..5261217 (-) 1425 WP_039022114.1 exodeoxyribonuclease I Machinery gene
  C3F40_RS27780 (C3F40_27780) - 5261399..5262577 (+) 1179 WP_054623412.1 site-specific integrase -
  C3F40_RS27785 (C3F40_27785) - 5262558..5262749 (-) 192 WP_000132739.1 AlpA family phage regulatory protein -
  C3F40_RS27790 (C3F40_27790) - 5262827..5263171 (-) 345 WP_098031474.1 hypothetical protein -
  C3F40_RS27795 (C3F40_27795) - 5263279..5263539 (-) 261 WP_032229698.1 hypothetical protein -
  C3F40_RS27800 (C3F40_27800) - 5263536..5264333 (-) 798 WP_104457586.1 DUF551 domain-containing protein -
  C3F40_RS27805 (C3F40_27805) - 5264336..5264617 (-) 282 WP_104457587.1 hypothetical protein -
  C3F40_RS27810 (C3F40_27810) - 5264619..5265032 (-) 414 WP_104457588.1 ead/Ea22-like family protein -
  C3F40_RS27815 (C3F40_27815) - 5265029..5265301 (-) 273 WP_104457589.1 antitoxin -
  C3F40_RS27820 (C3F40_27820) - 5265298..5265795 (-) 498 WP_104457590.1 hNH endonuclease -
  C3F40_RS27825 (C3F40_27825) - 5265792..5265956 (-) 165 WP_096965523.1 DUF2737 family protein -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54369.62 Da        Isoelectric Point: 5.3498

>NTDB_id=227150 C3F40_RS27775 WP_039022114.1 5259793..5261217(-) (sbcB) [Escherichia coli strain ECONIH4]
MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENE
AAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGL
PSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRG
NTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDAD
RLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDK
RIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=227150 C3F40_RS27775 WP_039022114.1 5259793..5261217(-) (sbcB) [Escherichia coli strain ECONIH4]
ATGACAGACACAGATAAACAACCTACCTTCCTCTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCGCCC
TGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCGCTG
ATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAACGAA
GCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTTCGA
CGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGCGCT
GGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGTCTA
CCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGTGTA
CGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATAAAC
ACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGCGGC
AACACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGACAT
TTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACGCCG
CCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCCGAC
CGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGTGGT
GGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTGACG
CCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGATAAA
CGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTGGCT
GGAGCACCGCCGCCAGGTATTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGTATG
CCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAG

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(12-187)

Exonuclease C-terminal (ExoI_SH3)

(211-471)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

99.156

0.584