Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   B9P52_RS09545 Genome accession   NZ_CP020917
Coordinates   2056065..2057510 (-) Length   481 a.a.
NCBI ID   WP_088147389.1    Uniprot ID   -
Organism   Achromobacter denitrificans strain PR1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2051065..2062510
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9P52_RS09520 (B9P52_09520) - 2052123..2052806 (+) 684 WP_172600274.1 hypothetical protein -
  B9P52_RS09525 (B9P52_09525) bfr 2052886..2053362 (-) 477 WP_062685233.1 bacterioferritin -
  B9P52_RS09530 (B9P52_09530) - 2053728..2054633 (-) 906 WP_376739741.1 DMT family transporter -
  B9P52_RS09535 (B9P52_09535) - 2054772..2055629 (+) 858 WP_088446482.1 LysR substrate-binding domain-containing protein -
  B9P52_RS09540 (B9P52_09540) - 2055662..2055943 (-) 282 WP_062685235.1 bacterioferritin-associated ferredoxin -
  B9P52_RS09545 (B9P52_09545) rpoN/rpoN1 2056065..2057510 (-) 1446 WP_088147389.1 RNA polymerase factor sigma-54 Machinery gene
  B9P52_RS09550 (B9P52_09550) - 2057509..2058132 (+) 624 WP_062685237.1 hypothetical protein -
  B9P52_RS09555 (B9P52_09555) leuA 2058547..2060259 (+) 1713 WP_088147388.1 2-isopropylmalate synthase -
  B9P52_RS09560 (B9P52_09560) - 2060320..2061648 (-) 1329 WP_088147387.1 amidase -

Sequence

Protein


Download         Length: 481 a.a.        Molecular weight: 52714.98 Da        Isoelectric Point: 4.7783

>NTDB_id=227138 B9P52_RS09545 WP_088147389.1 2056065..2057510(-) (rpoN/rpoN1) [Achromobacter denitrificans strain PR1]
MQNIVPMTRPILELRPGQHLTLTPQLQQSIRLLQLSTLDLEAEISQVLAENPLLERDDEPQSTEEHADSERESSVQDDEP
PLERETPAEEMPGSGGVYPDDDSSLPEAARPDTLREHLLGQLVLTRAEPRDVALAGLLIDELDENGYLGSPLEEILGWLP
AEMEPDLDELKAALSLLQSFDPAGIGARDMAECLLLQLRNPDLSRLPEAADGAVLACARRICAEHLSLLATGNTARLCAA
VGCDEPTFRAAHALILRLEPRPGRAWTVPAADYAVPDVIVRKTRRGWQATLNSAAVPRLQINGLYAQMLGNQKESAHAGL
QSQLQQARWMIRNVEQRFDTILRVAQAIVEHQTAFFSQGPAAMRPLILKDIAGELGLHESTISRATTQKYMLTPFGTLEL
KRFFGTGVSTEGGDATSATAVQTFIRQMVAEENRAKPLSDSQIMQKLADQGIVIARRTVAKYREALRIAPAALRKAQAGA
R

Nucleotide


Download         Length: 1446 bp        

>NTDB_id=227138 B9P52_RS09545 WP_088147389.1 2056065..2057510(-) (rpoN/rpoN1) [Achromobacter denitrificans strain PR1]
ATGCAAAATATTGTACCTATGACCCGTCCAATTTTAGAACTGCGACCTGGTCAGCACTTGACGCTGACGCCACAGCTGCA
GCAATCGATCCGATTGTTGCAGCTGTCCACGCTCGACCTTGAGGCCGAGATTTCGCAGGTGCTCGCGGAAAACCCGTTGC
TGGAACGGGACGACGAGCCCCAGTCGACCGAGGAGCACGCCGATTCCGAGCGCGAGTCCTCCGTGCAGGACGACGAGCCG
CCCCTCGAACGCGAGACGCCGGCCGAGGAAATGCCCGGGTCCGGCGGCGTGTACCCGGACGACGATTCCTCCCTGCCCGA
GGCGGCGCGGCCGGACACGCTGCGCGAGCATCTGTTGGGCCAACTGGTGCTGACGCGGGCGGAACCCCGCGACGTGGCCC
TGGCGGGCCTGCTGATCGACGAACTGGACGAGAACGGCTACCTGGGATCGCCGCTGGAGGAGATCCTGGGCTGGCTGCCG
GCCGAAATGGAGCCGGACCTCGACGAACTGAAGGCGGCCCTGTCCCTGCTGCAGTCGTTCGATCCGGCCGGCATCGGCGC
GCGCGACATGGCCGAATGCCTGCTGTTGCAACTGCGCAACCCCGACCTCTCGCGCCTGCCCGAGGCCGCGGACGGCGCGG
TCCTGGCCTGTGCGCGCCGCATCTGCGCCGAGCACCTGTCCCTGCTGGCCACCGGCAATACCGCCCGGCTGTGCGCCGCC
GTGGGCTGCGACGAACCGACCTTCCGGGCGGCCCATGCCCTGATCCTGCGCCTGGAGCCCCGGCCGGGGCGGGCCTGGAC
CGTGCCCGCCGCCGACTACGCGGTGCCCGACGTCATCGTGCGCAAGACCCGCCGCGGCTGGCAGGCCACGCTGAACAGCG
CCGCCGTGCCCCGGCTTCAGATCAACGGGCTGTATGCCCAGATGCTGGGCAACCAGAAGGAATCCGCGCACGCCGGCCTG
CAGTCGCAGCTGCAGCAGGCCCGCTGGATGATCCGCAACGTGGAGCAGCGCTTCGACACCATCCTGCGCGTGGCCCAGGC
CATCGTGGAACACCAGACGGCCTTCTTCAGCCAGGGGCCGGCGGCCATGCGGCCGCTCATCCTGAAGGACATCGCGGGCG
AGCTGGGCTTGCATGAATCCACGATTTCACGGGCCACAACGCAGAAGTACATGCTCACTCCGTTCGGCACACTGGAGCTC
AAGCGCTTCTTCGGCACCGGCGTGTCCACCGAGGGCGGGGACGCCACCTCGGCCACCGCCGTGCAAACGTTCATCCGCCA
GATGGTGGCGGAAGAGAACCGCGCCAAGCCGCTGTCGGACAGCCAGATCATGCAAAAGCTGGCCGATCAGGGGATAGTCA
TCGCCCGCCGGACGGTGGCAAAGTACCGCGAAGCGCTGCGAATCGCCCCGGCCGCGCTGCGCAAGGCGCAGGCCGGCGCC
CGCTGA

Domains

Predicted by InterProScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(108-305)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(12-55)

Sigma-54, DNA binding domain (Sigma54_DBD)

(320-475)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

49.901

100

0.522

Multiple sequence alignment