Detailed information NTG0227136

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: C3F40_RS22910
• Genome accession: NZ_CP026399
• Coordinates: 4323343..4324335 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain ECONIH4
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4318343..4329335

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C3F40_RS22880 (C3F40_22880)	ispD	4318404..4319114 (+)	711	WP_000246137.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
C3F40_RS22885 (C3F40_22885)	ispF	4319114..4319593 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
C3F40_RS22890 (C3F40_22890)	truD	4319590..4320639 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
C3F40_RS22895 (C3F40_22895)	surE	4320620..4321381 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
C3F40_RS22900 (C3F40_22900)	pcm	4321375..4322001 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
C3F40_RS22905 (C3F40_22905)	nlpD	4322186..4323280 (+)	1095	WP_311236220.1	murein hydrolase activator NlpD	-
C3F40_RS22910 (C3F40_22910)	rpoS	4323343..4324335 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
C3F40_RS22915 (C3F40_22915)	ygbN	4324429..4325793 (-)	1365	WP_000104466.1	GntP family transporter	-
C3F40_RS22920 (C3F40_22920)	ygbM	4325882..4326658 (-)	777	WP_001136936.1	HPr family phosphocarrier protein	-
C3F40_RS22925 (C3F40_22925)	ygbL	4326663..4327301 (-)	639	WP_001278994.1	aldolase	-
C3F40_RS22930 (C3F40_22930)	otnK	4327298..4328560 (-)	1263	WP_000590398.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=227136 C3F40_RS22910 WP_000081550.1 4323343..4324335(+) (rpoS) [Escherichia coli strain ECONIH4]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=227136 C3F40_RS22910 WP_000081550.1 4323343..4324335(+) (rpoS) [Escherichia coli strain ECONIH4]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715