Detailed information    

insolico Bioinformatically predicted

Overview


Name   coiA   Type   Machinery gene
Locus tag   B9L64_RS19500 Genome accession   NZ_CP020915
Coordinates   3787190..3788311 (+) Length   373 a.a.
NCBI ID   WP_003232938.1    Uniprot ID   -
Organism   Bacillus subtilis strain 50-1     
Function   homologous recombination; DNA uptake (predicted from homology)   
Homologous recombination DNA binding and uptake

Genomic Context


Location: 3782190..3793311
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9L64_RS19475 yjbB 3782831..3784048 (+) 1218 WP_080478438.1 MFS transporter -
  B9L64_RS19480 yjbC 3784213..3784791 (+) 579 WP_003224597.1 GNAT family N-acetyltransferase -
  B9L64_RS19485 spx 3784972..3785367 (+) 396 WP_014476435.1 transcriptional regulator Spx -
  B9L64_RS19490 yjbE 3785410..3786066 (-) 657 WP_003232944.1 TerC family protein -
  B9L64_RS21110 - 3786236..3786376 (+) 141 WP_119122854.1 hypothetical protein -
  B9L64_RS19495 mecA 3786343..3786999 (+) 657 WP_003245194.1 adaptor protein MecA Regulator
  B9L64_RS21115 - 3786994..3787116 (-) 123 WP_003245684.1 hypothetical protein -
  B9L64_RS19500 coiA 3787190..3788311 (+) 1122 WP_003232938.1 competence protein CoiA Machinery gene
  B9L64_RS19505 pepF 3788541..3790370 (+) 1830 WP_173401378.1 oligoendopeptidase F -
  B9L64_RS19510 - 3790408..3790575 (-) 168 WP_003244944.1 hypothetical protein -
  B9L64_RS19520 spxH 3790889..3791788 (-) 900 WP_024573348.1 protease adaptor protein SpxH -
  B9L64_RS19525 bhbI 3791785..3792183 (-) 399 WP_046380935.1 thiol management oxidoreductase -
  B9L64_RS19530 cwlQ 3792438..3793172 (-) 735 WP_046380936.1 bifunctional muramidase/murein lytic transglycosylase -

Sequence


Protein


Download         Length: 373 a.a.        Molecular weight: 43735.78 Da        Isoelectric Point: 10.1187

>NTDB_id=227126 B9L64_RS19500 WP_003232938.1 3787190..3788311(+) (coiA) [Bacillus subtilis strain 50-1]
MFHLLGAQQNQKLKRRRFFCPVCGGELAVKLGLQKAPHFAHKQNKSCSIDIEPESAYHLEGKRQLYVWLKTQRASPILEP
YIRTINQRPDVMARIKEHMLAVEYQCATIAPDVFQKRTEGFKQEGIIPQWIMGYSRLKRTASSFYQLSAFHWQFINASPY
RELICYCPERRSFLRLSHIIPFYTNHSYSSVQTIPIHRAGAGDLFFTEPKPSIQYSGWTKAIHRFRHKPHRFNSKETNRL
RLLFYEKRQTPFSFLPTEVFVPVRKGAVFKSPVFVWQGFLYLFMTDLGGKRAPIRFSAVLQQCKLHIHNKNIALRFECSE
ECLSEAVKQYIDFLCKKGFLRETQKEVYVLNQPAGGIHSMQDLIERDRSCFIE

Nucleotide


Download         Length: 1122 bp        

>NTDB_id=227126 B9L64_RS19500 WP_003232938.1 3787190..3788311(+) (coiA) [Bacillus subtilis strain 50-1]
CTGTTTCACCTTCTAGGCGCTCAGCAAAACCAGAAATTAAAGCGGAGACGGTTCTTCTGTCCGGTATGCGGGGGAGAGCT
AGCTGTGAAGCTCGGACTTCAAAAAGCGCCGCATTTTGCCCATAAACAGAACAAGTCCTGCTCCATAGACATCGAACCGG
AAAGCGCCTACCACTTAGAAGGAAAAAGACAGCTGTATGTATGGCTGAAAACACAACGGGCTTCACCAATATTGGAGCCG
TATATAAGGACAATCAACCAAAGACCGGACGTCATGGCAAGGATCAAGGAGCATATGCTTGCTGTTGAATATCAATGCGC
CACTATCGCTCCAGATGTCTTTCAAAAGCGGACAGAGGGCTTCAAACAAGAAGGAATCATCCCGCAGTGGATTATGGGAT
ACAGCCGCTTAAAACGGACTGCTTCGTCCTTTTATCAGCTTTCAGCTTTTCATTGGCAGTTTATCAATGCAAGTCCATAC
AGAGAGCTGATATGTTATTGTCCTGAAAGGCGTTCTTTTCTCCGGCTCAGCCACATCATTCCATTCTACACAAACCATTC
TTATTCCTCAGTCCAAACGATCCCTATCCATCGGGCAGGTGCAGGCGATCTTTTTTTCACTGAACCGAAACCCTCAATTC
AATATTCAGGCTGGACGAAAGCGATTCACCGTTTTCGCCATAAACCCCATCGGTTTAACTCAAAGGAAACAAATCGCCTT
AGGCTGCTGTTTTATGAGAAACGGCAGACGCCTTTTTCTTTTCTGCCGACTGAAGTGTTTGTTCCTGTTAGAAAAGGGGC
AGTTTTTAAGAGTCCGGTTTTTGTGTGGCAGGGGTTTCTTTATTTGTTTATGACGGATCTTGGAGGTAAACGTGCGCCAA
TTCGTTTTTCAGCCGTTTTGCAGCAGTGCAAACTGCACATTCATAATAAGAACATTGCACTCAGGTTTGAATGCAGCGAA
GAGTGTCTTTCAGAAGCGGTTAAACAGTATATTGATTTTTTGTGCAAGAAGGGATTTTTAAGGGAGACTCAGAAAGAAGT
ATATGTGCTGAATCAGCCTGCAGGCGGCATACACTCCATGCAGGATCTCATAGAAAGAGACCGCAGCTGTTTTATAGAAT
GA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Bacillus subtilis subsp. subtilis str. 168

99.196

100

0.992


Multiple sequence alignment