Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   B9L64_RS18935 Genome accession   NZ_CP020915
Coordinates   3674383..3674961 (+) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis strain 50-1     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3669383..3679961
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9L64_RS18915 hemAT 3669894..3671192 (-) 1299 WP_003245216.1 heme-based aerotactic transducer HemAT -
  B9L64_RS18920 comW 3671331..3672860 (-) 1530 WP_049140685.1 FAD-dependent oxidoreductase -
  B9L64_RS18925 yhxC 3672972..3673829 (+) 858 WP_003245662.1 SDR family oxidoreductase -
  B9L64_RS18930 yhzC 3673857..3674090 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  B9L64_RS18935 comK 3674383..3674961 (+) 579 WP_003245329.1 competence transcription factor ComK Regulator
  B9L64_RS18940 yhxD 3675008..3675907 (-) 900 WP_003245421.1 SDR family oxidoreductase -
  B9L64_RS18945 yhjA 3676124..3676393 (+) 270 WP_029726293.1 excalibur calcium-binding domain-containing protein -
  B9L64_RS18950 yhjB 3676437..3677906 (-) 1470 WP_029726292.1 sodium:solute symporter -
  B9L64_RS18955 yhjC 3677903..3678103 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  B9L64_RS18960 - 3678311..3678673 (-) 363 WP_003233132.1 hypothetical protein -
  B9L64_RS18965 yhjE 3678825..3679448 (+) 624 WP_010886465.1 VTT domain-containing protein -
  B9L64_RS18970 lepB 3679450..3679956 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=227118 B9L64_RS18935 WP_003245329.1 3674383..3674961(+) (comK) [Bacillus subtilis strain 50-1]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=227118 B9L64_RS18935 WP_003245329.1 3674383..3674961(+) (comK) [Bacillus subtilis strain 50-1]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCAGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCCAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment