Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   B9L64_RS13455 Genome accession   NZ_CP020915
Coordinates   2619132..2619422 (-) Length   96 a.a.
NCBI ID   WP_003226760.1    Uniprot ID   A0A7G9PCZ4
Organism   Bacillus subtilis strain 50-1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2614132..2624422
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9L64_RS13415 darA 2614155..2614484 (+) 330 WP_003242755.1 cyclic di-AMP receptor DarA -
  B9L64_RS13420 yaaR 2614497..2614937 (+) 441 WP_009966249.1 YaaR family protein -
  B9L64_RS13425 holB 2614949..2615938 (+) 990 WP_003226770.1 DNA polymerase III subunit delta' -
  B9L64_RS13430 ricT 2615941..2616768 (+) 828 WP_003226767.1 competence/sporulation regulator complex protein RicT -
  B9L64_RS13435 yabA 2616783..2617142 (+) 360 WP_003218308.1 replication initiation-control protein YabA -
  B9L64_RS13440 trmNF 2617201..2617944 (+) 744 WP_003244526.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  B9L64_RS13445 yazA 2617931..2618230 (+) 300 WP_046380716.1 GIY-YIG nuclease family protein -
  B9L64_RS13450 rsmI 2618205..2619083 (+) 879 WP_046380717.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  B9L64_RS13455 abrB 2619132..2619422 (-) 291 WP_003226760.1 transition state genes transcriptional regulator AbrB Regulator
  B9L64_RS13460 metG 2619917..2621911 (+) 1995 WP_089172433.1 methionine--tRNA ligase -
  B9L64_RS13465 dayD 2621990..2622757 (+) 768 WP_014475570.1 TatD family hydrolase -
  B9L64_RS13470 yabE 2622913..2624226 (+) 1314 WP_003226754.1 ubiquitin-like domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10772.62 Da        Isoelectric Point: 6.3482

>NTDB_id=227098 B9L64_RS13455 WP_003226760.1 2619132..2619422(-) (abrB) [Bacillus subtilis strain 50-1]
MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNLK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=227098 B9L64_RS13455 WP_003226760.1 2619132..2619422(-) (abrB) [Bacillus subtilis strain 50-1]
ATGTTTATGAAATCTACTGGTATTGTACGTAAAGTTGATGAATTAGGACGTGTAGTTATTCCTATCGAACTGCGTCGTAC
TCTTGGAATCGCAGAAAAAGATGCTCTTGAAATCTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGTAAAGAAGGC
GCTGAGCAAATCATCAGCGAAATCCAAAACCAGCTTCAAAACCTTAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G9PCZ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment