Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   B9L64_RS04395 Genome accession   NZ_CP020915
Coordinates   903957..904760 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis strain 50-1     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 898957..909760
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9L64_RS04375 glpQB 900103..900834 (-) 732 WP_003230288.1 glycerophosphodiester phosphodiesterase -
  B9L64_RS04380 yqiI 900913..901533 (-) 621 WP_010886565.1 N-acetylmuramoyl-L-alanine amidase -
  B9L64_RS04385 yqiH 901548..901841 (-) 294 WP_003230284.1 lipoprotein -
  B9L64_RS20955 - 902149..902301 (+) 153 WP_003230276.1 hypothetical protein -
  B9L64_RS04390 yqiG 902374..903492 (+) 1119 WP_004398691.1 NADH-dependent flavin oxidoreductase -
  B9L64_RS04395 spo0A 903957..904760 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  B9L64_RS04400 spoIVB 905036..906316 (-) 1281 WP_004398697.1 SpoIVB peptidase -
  B9L64_RS04405 recN 906491..908221 (-) 1731 WP_003230267.1 DNA repair protein RecN Machinery gene
  B9L64_RS04410 argR 908258..908707 (-) 450 WP_003230265.1 arginine repressor ArgR -
  B9L64_RS04415 yqxC 908805..909650 (-) 846 WP_003230264.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=227055 B9L64_RS04395 WP_003226427.1 903957..904760(-) (spo0A) [Bacillus subtilis strain 50-1]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=227055 B9L64_RS04395 WP_003226427.1 903957..904760(-) (spo0A) [Bacillus subtilis strain 50-1]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATCTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTTGGTTATACTGTC
AGCATGACAAAAGCTAAACCTACCAACAGTGAATTCATTGCAATGGTTGCGGATAAGCTGAGGTTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment