Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   B9L64_RS03405 Genome accession   NZ_CP020915
Coordinates   726735..727355 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain 50-1     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 721735..732355
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9L64_RS03365 ptsA 722866..723372 (-) 507 WP_009967573.1 glucose PTS transporter subunit IIA -
  B9L64_RS03370 ypqA 723510..723929 (+) 420 WP_004398640.1 Hsp20/alpha crystallin family protein -
  B9L64_RS03375 sppG 723950..724327 (-) 378 WP_004398696.1 YppG family protein -
  B9L64_RS03380 yppF 724515..724703 (+) 189 WP_003230690.1 YppF family protein -
  B9L64_RS03385 yppE 724742..725113 (-) 372 WP_003246080.1 YppE family protein -
  B9L64_RS03390 yppD 725159..725404 (-) 246 WP_004398488.1 YppD family protein -
  B9L64_RS03395 sspM 725603..725707 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  B9L64_RS03400 yppC 725732..726694 (-) 963 WP_004398707.1 DUF2515 domain-containing protein -
  B9L64_RS03405 recU 726735..727355 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  B9L64_RS03410 ponA 727377..730121 (+) 2745 WP_004398589.1 PBP1A family penicillin-binding protein -
  B9L64_RS03415 ypoC 730197..730691 (-) 495 WP_009967579.1 YpoC family protein -
  B9L64_RS03420 nth 730688..731347 (-) 660 WP_009967580.1 endonuclease III -
  B9L64_RS03425 dnaD 731366..732064 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=227054 B9L64_RS03405 WP_004399067.1 726735..727355(+) (recU) [Bacillus subtilis strain 50-1]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=227054 B9L64_RS03405 WP_004399067.1 726735..727355(+) (recU) [Bacillus subtilis strain 50-1]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment