Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   B9L64_RS00200 Genome accession   NZ_CP020915
Coordinates   34467..34745 (+) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis strain 50-1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 29467..39745
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9L64_RS00180 panEB 30654..31565 (+) 912 WP_003245639.1 ketopantoate reductase family protein -
  B9L64_RS00185 ampS 31599..32831 (-) 1233 WP_003232341.1 aminopeptidase -
  B9L64_RS00190 ykpC 32941..33075 (-) 135 WP_003238865.1 protein YkpC -
  B9L64_RS00195 mreBH 33176..34183 (-) 1008 WP_003245743.1 cell shape-determining protein MreBH -
  B9L64_RS00200 abrB 34467..34745 (+) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  B9L64_RS00205 kinC 34935..36221 (+) 1287 WP_003232333.1 two-component sensor histidine kinase KinC -
  B9L64_RS00210 ykqA 36237..37070 (+) 834 WP_003245146.1 gamma-glutamylcyclotransferase -
  B9L64_RS00215 ktrC 37133..37798 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  B9L64_RS00220 ade 37953..39686 (+) 1734 WP_003245362.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=227049 B9L64_RS00200 WP_003244728.1 34467..34745(+) (abrB) [Bacillus subtilis strain 50-1]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=227049 B9L64_RS00200 WP_003244728.1 34467..34745(+) (abrB) [Bacillus subtilis strain 50-1]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576

Multiple sequence alignment