Detailed information
Bioinformatically predicted
Overview
| Name | rocC | Type | Regulator |
| Locus tag | B0B39_RS17225 | Genome accession | NZ_CP020894 |
| Coordinates | 3916521..3917210 (-) | Length | 229 a.a. |
| NCBI ID | WP_003634235.1 | Uniprot ID | D3HMN1 |
| Organism | Legionella longbeachae strain F1157CHC | ||
| Function | rocR chaperone; repress natural transformation (predicted from homology) Competence regulation |
||
Genomic Context
Location: 3911521..3922210
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| B0B39_RS17205 (B0B39_10445) | pyk | 3912271..3913689 (+) | 1419 | WP_003634240.1 | pyruvate kinase | - |
| B0B39_RS17215 (B0B39_10455) | - | 3914422..3915090 (+) | 669 | WP_003634238.1 | hypothetical protein | - |
| B0B39_RS17220 (B0B39_10460) | - | 3915211..3916329 (+) | 1119 | WP_003634237.1 | hypothetical protein | - |
| B0B39_RS17225 (B0B39_10465) | rocC | 3916521..3917210 (-) | 690 | WP_003634235.1 | ProQ/FinO family protein | Regulator |
| B0B39_RS17230 (B0B39_10470) | - | 3917502..3917717 (+) | 216 | WP_003634232.1 | hypothetical protein | - |
| B0B39_RS17235 (B0B39_10475) | dapB | 3917736..3918467 (+) | 732 | WP_003634231.1 | 4-hydroxy-tetrahydrodipicolinate reductase | - |
| B0B39_RS17240 (B0B39_10480) | - | 3918506..3920983 (-) | 2478 | WP_003634229.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 229 a.a. Molecular weight: 25675.36 Da Isoelectric Point: 10.4497
>NTDB_id=226985 B0B39_RS17225 WP_003634235.1 3916521..3917210(-) (rocC) [Legionella longbeachae strain F1157CHC]
MRKQELHPRTAVINKAQKNKSKKARTDALLWLAANFPAAFDNSLRIRPLKIGIMDDILLHAEKAAEVGISKSKLREAVVL
FTRRLDYLACLKLREMRIDLQGNDVGEVSSEEAEYAAAKIKKRVEKSARNARKALADKTANPSNPNPQGMSYHSKIMNQS
SNTTDDNFPVYPTRSTYNALNATTQPVRTTAVVVKHKSAKQYDPDAVARLKEKLGLSRNSEEKKETVEE
MRKQELHPRTAVINKAQKNKSKKARTDALLWLAANFPAAFDNSLRIRPLKIGIMDDILLHAEKAAEVGISKSKLREAVVL
FTRRLDYLACLKLREMRIDLQGNDVGEVSSEEAEYAAAKIKKRVEKSARNARKALADKTANPSNPNPQGMSYHSKIMNQS
SNTTDDNFPVYPTRSTYNALNATTQPVRTTAVVVKHKSAKQYDPDAVARLKEKLGLSRNSEEKKETVEE
Nucleotide
Download Length: 690 bp
>NTDB_id=226985 B0B39_RS17225 WP_003634235.1 3916521..3917210(-) (rocC) [Legionella longbeachae strain F1157CHC]
ATGAGAAAACAGGAGCTGCACCCACGCACCGCTGTTATTAATAAAGCTCAAAAAAATAAGTCTAAAAAAGCACGGACAGA
TGCTTTATTATGGCTTGCTGCAAATTTTCCTGCAGCATTTGATAATTCACTACGAATTCGCCCATTAAAAATTGGTATTA
TGGATGATATTTTACTTCATGCAGAAAAAGCTGCGGAAGTTGGTATTTCCAAAAGCAAATTGAGAGAAGCAGTGGTGTTA
TTTACGCGCCGTCTAGATTATTTGGCCTGTCTTAAGCTTCGAGAAATGCGAATTGATTTGCAAGGTAATGACGTTGGTGA
AGTGAGTTCAGAGGAAGCTGAATATGCGGCTGCCAAGATTAAAAAGCGTGTTGAGAAAAGTGCTCGTAACGCGCGTAAAG
CGCTTGCAGACAAAACAGCTAATCCTTCTAATCCAAATCCTCAAGGCATGAGCTACCACTCAAAAATAATGAATCAATCA
TCAAACACAACGGATGATAATTTTCCTGTTTATCCCACACGATCTACCTATAATGCCCTAAATGCAACGACACAACCGGT
TAGAACTACTGCTGTAGTGGTAAAGCATAAGTCAGCAAAACAATATGATCCTGATGCTGTAGCTCGTTTGAAAGAGAAAT
TGGGATTGTCCCGAAATTCCGAAGAAAAAAAAGAAACTGTTGAAGAGTAA
ATGAGAAAACAGGAGCTGCACCCACGCACCGCTGTTATTAATAAAGCTCAAAAAAATAAGTCTAAAAAAGCACGGACAGA
TGCTTTATTATGGCTTGCTGCAAATTTTCCTGCAGCATTTGATAATTCACTACGAATTCGCCCATTAAAAATTGGTATTA
TGGATGATATTTTACTTCATGCAGAAAAAGCTGCGGAAGTTGGTATTTCCAAAAGCAAATTGAGAGAAGCAGTGGTGTTA
TTTACGCGCCGTCTAGATTATTTGGCCTGTCTTAAGCTTCGAGAAATGCGAATTGATTTGCAAGGTAATGACGTTGGTGA
AGTGAGTTCAGAGGAAGCTGAATATGCGGCTGCCAAGATTAAAAAGCGTGTTGAGAAAAGTGCTCGTAACGCGCGTAAAG
CGCTTGCAGACAAAACAGCTAATCCTTCTAATCCAAATCCTCAAGGCATGAGCTACCACTCAAAAATAATGAATCAATCA
TCAAACACAACGGATGATAATTTTCCTGTTTATCCCACACGATCTACCTATAATGCCCTAAATGCAACGACACAACCGGT
TAGAACTACTGCTGTAGTGGTAAAGCATAAGTCAGCAAAACAATATGATCCTGATGCTGTAGCTCGTTTGAAAGAGAAAT
TGGGATTGTCCCGAAATTCCGAAGAAAAAAAAGAAACTGTTGAAGAGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rocC | Legionella pneumophila str. Paris |
70 |
100 |
0.703 |