Detailed information    

insolico Bioinformatically predicted

Overview

Name   lqsT   Type   Regulator
Locus tag   B0B39_RS05825 Genome accession   NZ_CP020894
Coordinates   1336561..1337820 (+) Length   419 a.a.
NCBI ID   WP_003632208.1    Uniprot ID   D3HRD7
Organism   Legionella longbeachae strain F1157CHC     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1331561..1342820
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B0B39_RS05815 (B0B39_17170) - 1332101..1333762 (-) 1662 WP_003632210.1 BamA/TamA family outer membrane protein -
  B0B39_RS05820 (B0B39_17175) mutS 1333859..1336396 (-) 2538 WP_003632209.1 DNA mismatch repair protein MutS -
  B0B39_RS05825 (B0B39_17180) lqsT 1336561..1337820 (+) 1260 WP_003632208.1 HAMP domain-containing sensor histidine kinase Regulator
  B0B39_RS05830 (B0B39_17185) - 1338061..1338777 (-) 717 WP_003632207.1 iron-containing redox enzyme family protein -
  B0B39_RS05835 (B0B39_17190) - 1338963..1340333 (+) 1371 WP_003632204.1 glutamine synthetase -
  B0B39_RS05840 (B0B39_17195) - 1340498..1341892 (+) 1395 WP_165898324.1 aldehyde dehydrogenase family protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 48401.86 Da        Isoelectric Point: 8.5210

>NTDB_id=226966 B0B39_RS05825 WP_003632208.1 1336561..1337820(+) (lqsT) [Legionella longbeachae strain F1157CHC]
MKRLKESLHIIYQYLSKQTEDASHQITLFGIVMMINYPLFGVFWKFESFQLSEEFCLRLIATFLCACLAVNRFWPRFLLK
WLPIFWYLVLLFCLPYFFCYLTLINHCSTLWLMNCVSAIFFLLLVTSALGSLILIFGGCGLAFFSYFLTHRVMEYVPGTI
SLFSLLITCVAAVVIGVLFARDREIIIAGRLSGMRMLASSIAHDLRTPLASIYLQAELQGIILNKIKNSEIRNDLQESLN
KITRGIETSNRIISMQLSNIRHNKFNTSNFSIYPIHNLIERAVDDYPLKETQKSLIHVNYENNFSIWLEELAFKNLLWNL
LKNSLEYIEETGKGIISIWLETGVGKDNFNYLHVKDTARGIYSKNFGKIFERFYSERHNGTGLGLAYCKLLMQEAGGDIF
CKGKLNEFAHFTVKFPKID

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=226966 B0B39_RS05825 WP_003632208.1 1336561..1337820(+) (lqsT) [Legionella longbeachae strain F1157CHC]
ATGAAGCGGTTAAAAGAGAGTTTACATATTATTTATCAATATCTTTCGAAACAGACAGAAGATGCAAGTCACCAAATTAC
ATTATTTGGTATCGTGATGATGATCAACTATCCGTTATTCGGTGTTTTTTGGAAATTCGAAAGTTTTCAACTGAGTGAAG
AGTTTTGCTTGCGGCTTATTGCTACTTTTCTTTGTGCATGTTTGGCTGTAAATCGATTTTGGCCGCGATTTTTATTGAAA
TGGTTACCTATTTTTTGGTATCTCGTTTTATTATTTTGTTTGCCATATTTTTTTTGTTATTTAACACTTATCAACCATTG
CTCTACGTTGTGGTTAATGAATTGTGTTTCTGCTATTTTTTTTCTTTTATTGGTAACCAGTGCTTTGGGATCCCTTATTC
TCATTTTTGGAGGATGTGGGCTTGCCTTTTTTTCTTACTTTTTAACCCATCGCGTTATGGAGTATGTACCAGGCACTATT
TCATTATTTAGTCTATTAATAACGTGTGTTGCTGCAGTCGTGATTGGTGTTTTGTTTGCTCGGGATAGAGAAATTATTAT
TGCAGGTCGTCTTTCAGGAATGCGTATGTTGGCGAGTAGTATTGCACATGATCTGCGTACACCCCTGGCCAGTATATATT
TGCAAGCTGAGTTACAGGGAATTATTTTGAATAAAATCAAGAATTCCGAGATAAGAAACGATTTACAGGAAAGTTTAAAT
AAAATAACGCGTGGAATAGAAACAAGTAATCGCATCATTAGCATGCAGTTAAGTAATATACGCCATAATAAGTTCAATAC
AAGTAATTTTAGTATTTATCCAATCCATAATTTAATTGAAAGGGCTGTCGATGATTATCCATTAAAAGAAACACAAAAAT
CGCTTATTCATGTTAATTATGAAAATAATTTTTCCATTTGGTTAGAAGAGTTAGCGTTTAAGAACCTCCTATGGAATTTA
TTAAAAAATAGCCTCGAATACATTGAAGAAACAGGTAAGGGTATTATTTCTATTTGGTTGGAAACTGGTGTTGGAAAAGA
TAATTTCAATTACCTGCACGTTAAGGATACAGCAAGGGGAATATACTCTAAAAATTTCGGGAAAATATTTGAGCGTTTCT
ATTCTGAACGTCATAATGGTACAGGTCTAGGTCTGGCTTATTGTAAATTACTGATGCAAGAGGCGGGCGGTGATATTTTT
TGTAAGGGGAAATTAAATGAATTTGCTCATTTTACTGTAAAATTTCCTAAAATCGATTAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(311-416)

His Kinase A (phospho-acceptor) domain (HisKA)

(196-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D3HRD7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lqsT Legionella pneumophila subsp. pneumophila str. Philadelphia 1

70.952

100

0.711

Multiple sequence alignment