Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   C2R02_RS14965 Genome accession   NZ_CP026359
Coordinates   2866559..2867551 (-) Length   330 a.a.
NCBI ID   WP_000081588.1    Uniprot ID   Q540P0
Organism   Escherichia coli strain 2_0     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 2861559..2872551
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2R02_RS14945 otnK 2862335..2863501 (+) 1167 WP_001393459.1 3-oxo-tetronate kinase -
  C2R02_RS14950 ygbL 2863593..2864231 (+) 639 WP_001278994.1 aldolase -
  C2R02_RS14955 ygbM 2864236..2865012 (+) 777 WP_001136934.1 HPr family phosphocarrier protein -
  C2R02_RS14960 ygbN 2865101..2866465 (+) 1365 WP_000104441.1 GntP family transporter -
  C2R02_RS14965 rpoS 2866559..2867551 (-) 993 WP_000081588.1 RNA polymerase sigma factor RpoS Regulator
  C2R02_RS14970 nlpD 2867614..2868708 (-) 1095 WP_306174120.1 murein hydrolase activator NlpD -
  C2R02_RS14975 pcm 2868893..2869519 (-) 627 WP_000254708.1 protein-L-isoaspartate O-methyltransferase -
  C2R02_RS14980 surE 2869513..2870274 (-) 762 WP_001295182.1 5'/3'-nucleotidase SurE -
  C2R02_RS14985 truD 2870255..2871304 (-) 1050 WP_000568943.1 tRNA pseudouridine(13) synthase TruD -
  C2R02_RS14990 ispF 2871301..2871780 (-) 480 WP_001219242.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  C2R02_RS14995 ispD 2871780..2872490 (-) 711 WP_000246138.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 37971.86 Da        Isoelectric Point: 4.5886

>NTDB_id=226863 C2R02_RS14965 WP_000081588.1 2866559..2867551(-) (rpoS) [Escherichia coli strain 2_0]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide


Download         Length: 993 bp        

>NTDB_id=226863 C2R02_RS14965 WP_000081588.1 2866559..2867551(-) (rpoS) [Escherichia coli strain 2_0]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAACAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

Sigma-70 region 2 (Sigma70_r2)

(94-163)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(56-88)

Sigma-70, region 4 (Sigma70_r4)

(262-315)

Sigma-70 region 3 (Sigma70_r3)

(174-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q540P0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

73.065

97.879

0.715