Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   B4U37_RS14160 Genome accession   NZ_CP020880
Coordinates   2733404..2735110 (-) Length   568 a.a.
NCBI ID   WP_088018749.1    Uniprot ID   -
Organism   Sutcliffiella horikoshii strain 20a     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2728404..2740110
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B4U37_RS14135 (B4U37_14110) - 2729297..2729539 (+) 243 WP_010194894.1 DUF2627 domain-containing protein -
  B4U37_RS14140 (B4U37_14115) - 2729568..2730293 (-) 726 WP_010194892.1 glycerophosphodiester phosphodiesterase -
  B4U37_RS14145 (B4U37_14120) - 2730386..2730541 (+) 156 WP_088018746.1 YycC family protein -
  B4U37_RS14150 (B4U37_14125) spo0A 2730637..2731428 (-) 792 WP_088018747.1 sporulation transcription factor Spo0A -
  B4U37_RS14155 (B4U37_14130) spoIVB 2731702..2732997 (-) 1296 WP_088018748.1 SpoIVB peptidase -
  B4U37_RS14160 (B4U37_14135) recN 2733404..2735110 (-) 1707 WP_088018749.1 DNA repair protein RecN Machinery gene
  B4U37_RS14165 (B4U37_14140) argR 2735133..2735582 (-) 450 WP_010194884.1 transcriptional regulator AhrC/ArgR -
  B4U37_RS14170 (B4U37_14145) - 2735675..2736511 (-) 837 WP_088018750.1 TlyA family RNA methyltransferase -
  B4U37_RS14175 (B4U37_14150) dxs 2736518..2738410 (-) 1893 WP_088020301.1 1-deoxy-D-xylulose-5-phosphate synthase -
  B4U37_RS14180 (B4U37_14155) - 2738736..2739620 (-) 885 WP_157663881.1 polyprenyl synthetase family protein -
  B4U37_RS14185 (B4U37_14160) - 2739633..2739869 (-) 237 WP_088018752.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 568 a.a.        Molecular weight: 64255.02 Da        Isoelectric Point: 4.9736

>NTDB_id=226846 B4U37_RS14160 WP_088018749.1 2733404..2735110(-) (recN) [Sutcliffiella horikoshii strain 20a]
MIAELTIKNFAIIESLSVSFDKGLTVLTGETGAGKSIIIDAIHLLAGGRGSHEFVRFGEKRAELEGLFLLEEEKHPAYKV
CQELGIDIEDEMVVLRREIHATGKSVCRVNGKLVTIALLREVGQTLVDIHGQHEHQELMDPDLHLSLLDQFGGVAVQKEL
KEYRNIYTSYKDVEKRLLELTENEQKVAHRLDLLQFQAEEISNAQLTVNEEDELLDERNKISNYERLYQSLNNCYHAMHG
EQKGLDWVGQAMSESEGLEEIDKNLKDVHEIISNSYYQLEELSYRIRDEIDQLEFDPNRLDFIEGRLNEIKQLKRKYGTT
VAEVLEYASKIEEELETLQNRDSHIHQLQESLESLKQDLALEAKSLTDARRKASEKLMKSIHKELKDLYLEKAIFDVNMD
VKKEKASGDVVFGKNGVDIVEFYLTTNPGEPLKPMAKVASGGELSRIMLALKSIFSRHQGITSIIFDEVDTGVSGRVAQA
IAEKIYQVSVDSQVLCISHLPQVAAMSDTHLFISKEVSGERTKTKVRGLNQDEKVREIGRMISGVEITSLTKEHARELLE
IAGSIKQG

Nucleotide


Download         Length: 1707 bp        

>NTDB_id=226846 B4U37_RS14160 WP_088018749.1 2733404..2735110(-) (recN) [Sutcliffiella horikoshii strain 20a]
ATGATCGCTGAGTTAACGATTAAAAATTTTGCTATTATAGAATCCCTATCTGTTTCTTTTGACAAAGGGTTAACGGTTTT
AACCGGGGAGACTGGAGCGGGTAAATCCATTATCATTGATGCCATTCACTTGCTGGCAGGTGGACGGGGATCCCATGAGT
TTGTTCGATTTGGAGAAAAAAGAGCGGAATTAGAAGGATTGTTCCTACTTGAAGAGGAGAAGCATCCTGCCTATAAAGTT
TGCCAGGAGCTTGGTATTGATATTGAAGACGAAATGGTTGTCTTAAGACGAGAAATCCATGCTACAGGTAAAAGTGTTTG
CCGTGTTAATGGAAAGCTTGTCACCATTGCGTTGTTAAGGGAAGTTGGTCAGACATTGGTGGACATTCATGGACAACATG
AGCATCAAGAACTAATGGACCCGGATTTGCACCTTTCGCTTTTAGATCAGTTTGGCGGAGTAGCTGTACAAAAGGAACTT
AAAGAATATAGAAACATTTATACTTCTTATAAGGATGTAGAAAAAAGGTTGTTAGAACTCACTGAAAATGAGCAAAAGGT
TGCACATCGCCTTGATTTACTTCAGTTCCAAGCAGAAGAGATCAGCAACGCGCAATTAACCGTGAATGAAGAGGATGAGC
TGCTCGACGAACGGAACAAAATCAGTAACTATGAACGACTTTATCAATCGCTCAACAACTGTTACCATGCAATGCACGGA
GAGCAAAAGGGACTCGATTGGGTAGGACAAGCCATGTCTGAATCCGAGGGCCTGGAAGAAATCGATAAAAACCTTAAAGA
TGTTCACGAAATCATTTCTAACTCTTATTATCAATTAGAAGAACTCTCTTATCGTATCAGAGATGAAATTGATCAGCTTG
AATTTGATCCAAACCGTCTTGATTTTATTGAAGGAAGATTAAATGAAATCAAGCAGCTAAAGCGAAAATACGGTACTACA
GTTGCGGAAGTTTTGGAATATGCTTCGAAAATAGAAGAGGAGTTAGAGACCCTGCAAAACCGTGATTCGCACATACACCA
GCTGCAGGAGTCCTTAGAGTCGCTCAAACAAGATCTTGCACTTGAAGCGAAATCTCTAACTGATGCACGTAGAAAAGCTT
CCGAGAAATTGATGAAGAGCATTCATAAAGAGCTCAAAGACTTGTACTTGGAAAAAGCGATCTTTGATGTGAACATGGAC
GTGAAAAAAGAAAAGGCATCAGGGGACGTCGTGTTTGGTAAAAATGGCGTGGATATTGTGGAGTTTTACCTTACGACAAA
CCCAGGGGAACCGTTGAAGCCGATGGCAAAAGTCGCCTCTGGCGGAGAGCTTTCGAGGATTATGCTTGCTTTGAAGAGCA
TCTTCTCTAGACACCAAGGTATCACATCCATTATTTTTGATGAAGTCGATACAGGAGTCAGCGGCAGGGTGGCACAGGCT
ATCGCCGAGAAGATTTATCAGGTCTCGGTTGATTCGCAGGTCCTTTGCATCTCCCACTTACCGCAAGTCGCGGCTATGTC
AGATACCCATCTATTTATCAGCAAAGAAGTATCCGGTGAGCGCACAAAAACGAAGGTGCGTGGGTTGAATCAGGACGAAA
AGGTACGTGAAATCGGCAGGATGATTTCTGGCGTGGAGATTACTTCATTGACGAAGGAGCATGCTCGTGAGTTGTTGGAG
ATTGCGGGAAGTATTAAGCAGGGGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-516)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

59.756

100

0.604

Multiple sequence alignment