Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   B4U37_RS07170 Genome accession   NZ_CP020880
Coordinates   1383592..1385406 (+) Length   604 a.a.
NCBI ID   WP_088017675.1    Uniprot ID   A0A1Y0CKK7
Organism   Sutcliffiella horikoshii strain 20a     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1378592..1390406
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B4U37_RS07150 (B4U37_07140) - 1378798..1379352 (-) 555 Protein_1369 TerC family protein -
  B4U37_RS07155 (B4U37_07145) mecA 1379899..1380591 (+) 693 WP_088017672.1 adaptor protein MecA -
  B4U37_RS07160 (B4U37_07150) cls 1380704..1382221 (+) 1518 WP_088017673.1 cardiolipin synthase -
  B4U37_RS07165 (B4U37_07155) - 1382329..1383507 (+) 1179 WP_088017674.1 competence protein CoiA -
  B4U37_RS07170 (B4U37_07160) pepF 1383592..1385406 (+) 1815 WP_088017675.1 oligoendopeptidase F Regulator
  B4U37_RS07175 (B4U37_07165) - 1386233..1387105 (-) 873 WP_088017676.1 ClpXP adapter SpxH family protein -
  B4U37_RS07180 (B4U37_07170) - 1387095..1387511 (-) 417 WP_088017677.1 globin -
  B4U37_RS07190 (B4U37_07180) - 1387847..1388494 (-) 648 WP_088017678.1 lytic transglycosylase domain-containing protein -
  B4U37_RS07195 (B4U37_07185) - 1388491..1389102 (-) 612 WP_088017679.1 CYTH domain-containing protein -
  B4U37_RS07200 (B4U37_07190) - 1389288..1389656 (+) 369 WP_010192857.1 hypothetical protein -
  B4U37_RS07205 (B4U37_07195) - 1389672..1390304 (+) 633 WP_010192858.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 69677.92 Da        Isoelectric Point: 4.7086

>NTDB_id=226837 B4U37_RS07170 WP_088017675.1 1383592..1385406(+) (pepF) [Sutcliffiella horikoshii strain 20a]
MAEQTAVKKLQERKDISVEDTWRLEDIFSSDEAWEKEFQDVKGMIGKIKDYEGKLSESADALFEALQYQDSISSRLGKLY
TYAHMRYDQDTTNSFYQGLNDRATNLYTQVASALSFVVPEILTMKEEDIAKFLQENKELALYEHSLDEINRQRPHVLSAK
EEALLAEASEVLSASSNTFGMLNNADITFPSVKDENGEEIEITHGRYIRFLESEDQEVRKNAFKAVYETYGKYRNTFSST
LGGAVKKDNFQAKVRNYDSARQSALSNNNIPETVYDNLVNTINKNLHLLHRYVDLRKKVLGVEELHMYDLYTPLIKEANM
KVSYEEAKDYLLKGLAPLGQEYLDIVKEGFDNRWVDVQENKGKRSGAYSSGTYGTNPYILMNWQDNVNNLFTLAHEFGHS
VHSYYTRKTQPYPYGNYSIFVAEVASTCNEALLNDYLLKTVDDDKKRLYLLNHYLEGFRGTVFRQTMFAEFEHKIHELAQ
NGEALTADLLTETYYELNKKYFGENITIDEEIGLEWARIPHFYYNYYVYQYATGYSAATALSKQILEEGQPAVDRYLEFL
KAGSSDYPIEVLKKAGVDMTQSNPIEEACKVFEEKLKEMEELLS

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=226837 B4U37_RS07170 WP_088017675.1 1383592..1385406(+) (pepF) [Sutcliffiella horikoshii strain 20a]
ATGGCGGAACAAACTGCTGTTAAGAAATTACAAGAGCGTAAAGACATCTCTGTGGAGGATACATGGAGATTAGAGGATAT
TTTCTCAAGCGATGAAGCATGGGAAAAAGAGTTTCAAGACGTAAAAGGAATGATCGGAAAGATAAAGGATTATGAGGGGA
AACTGTCCGAGTCTGCTGATGCGTTGTTTGAAGCATTACAGTACCAGGATTCCATCTCCAGTCGATTAGGAAAGCTTTAT
ACATATGCGCATATGCGTTATGATCAAGATACTACGAACTCCTTCTACCAAGGACTGAACGATCGTGCAACCAATCTTTA
TACACAAGTGGCAAGCGCGCTATCTTTTGTGGTACCTGAAATTTTAACGATGAAGGAAGAAGACATCGCCAAGTTTCTGC
AAGAAAATAAGGAACTAGCTTTATACGAGCACTCCTTAGACGAAATTAATCGCCAACGACCGCATGTGTTATCCGCGAAA
GAAGAAGCATTATTAGCAGAAGCTTCTGAAGTGTTATCCGCATCTTCCAACACGTTTGGAATGCTGAACAATGCTGACAT
TACCTTCCCATCTGTAAAAGATGAAAACGGGGAAGAAATCGAAATCACGCATGGCCGTTACATCCGCTTCTTAGAAAGTG
AAGATCAAGAAGTGAGAAAAAATGCATTTAAAGCGGTTTATGAAACGTACGGAAAATATCGCAACACATTTTCCAGTACA
TTAGGCGGAGCGGTGAAAAAGGACAACTTCCAAGCTAAGGTCCGTAACTATGATTCAGCCCGACAGTCTGCCCTAAGCAA
CAATAATATTCCGGAAACTGTCTACGATAACTTGGTAAACACGATCAATAAAAACTTACACCTTTTACACCGTTATGTGG
ATCTTCGCAAAAAAGTACTTGGTGTTGAAGAGTTGCATATGTATGACTTGTACACCCCTCTTATCAAAGAAGCGAACATG
AAGGTTTCGTACGAGGAAGCAAAAGATTACTTGCTTAAAGGTCTTGCACCATTAGGTCAGGAGTATCTTGACATTGTAAA
AGAAGGATTCGATAACAGATGGGTAGACGTTCAAGAGAACAAAGGGAAGCGATCTGGTGCTTATTCTTCTGGAACATATG
GAACCAACCCATATATCTTAATGAACTGGCAGGATAATGTGAATAACCTGTTCACGCTTGCACATGAGTTCGGCCATTCC
GTACACAGCTACTACACAAGAAAAACACAGCCGTATCCGTATGGAAACTACTCCATCTTCGTGGCAGAAGTAGCATCTAC
ATGCAACGAAGCACTATTAAATGATTACTTGTTAAAAACAGTGGATGACGATAAAAAACGTCTATACTTGCTGAACCACT
ATTTAGAAGGCTTCCGTGGCACAGTATTCCGTCAAACAATGTTTGCTGAATTTGAGCACAAGATCCATGAGCTTGCGCAA
AATGGTGAAGCGTTGACTGCTGACCTTCTAACAGAAACATACTATGAGTTAAACAAGAAATACTTTGGTGAGAACATCAC
AATTGATGAGGAAATCGGTTTAGAGTGGGCAAGAATCCCTCACTTCTACTACAACTACTATGTATACCAATACGCGACAG
GCTACAGTGCAGCTACAGCACTAAGCAAGCAGATCCTAGAAGAAGGGCAGCCTGCTGTGGACCGTTATCTTGAGTTCTTG
AAAGCCGGCAGCTCCGATTATCCAATTGAAGTGTTGAAAAAGGCTGGAGTGGACATGACTCAGTCCAACCCGATTGAAGA
AGCTTGTAAAGTATTTGAAGAGAAGTTAAAAGAAATGGAAGAATTGCTTTCCTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(211-590)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y0CKK7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.257

96.523

0.485

Multiple sequence alignment