Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   B4U37_RS07110 Genome accession   NZ_CP020880
Coordinates   1368553..1369515 (+) Length   320 a.a.
NCBI ID   WP_088017664.1    Uniprot ID   A0A1Y0CKJ8
Organism   Sutcliffiella horikoshii strain 20a     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1363553..1374515
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B4U37_RS07085 (B4U37_07075) - 1364012..1364956 (+) 945 WP_010191986.1 ABC transporter ATP-binding protein -
  B4U37_RS07090 (B4U37_07080) - 1365622..1366836 (+) 1215 WP_088017661.1 putative glycoside hydrolase -
  B4U37_RS07095 (B4U37_07085) - 1366885..1367070 (-) 186 WP_088017662.1 hypothetical protein -
  B4U37_RS07100 (B4U37_07090) - 1367241..1367816 (+) 576 WP_088017663.1 N-acetyltransferase -
  B4U37_RS07105 (B4U37_07095) - 1367942..1368385 (+) 444 WP_244951487.1 MarR family winged helix-turn-helix transcriptional regulator -
  B4U37_RS07110 (B4U37_07100) ceuB 1368553..1369515 (+) 963 WP_088017664.1 ABC transporter permease Machinery gene
  B4U37_RS07115 (B4U37_07105) - 1369499..1370455 (+) 957 WP_088017665.1 iron chelate uptake ABC transporter family permease subunit -
  B4U37_RS07120 (B4U37_07110) - 1370443..1371201 (+) 759 WP_088017666.1 ABC transporter ATP-binding protein -
  B4U37_RS07125 (B4U37_07115) - 1371367..1372335 (+) 969 WP_088017667.1 siderophore ABC transporter substrate-binding protein -
  B4U37_RS07130 (B4U37_07120) - 1372434..1373165 (-) 732 WP_157663736.1 GDSL-type esterase/lipase family protein -

Sequence

Protein


Download         Length: 320 a.a.        Molecular weight: 35557.02 Da        Isoelectric Point: 10.1143

>NTDB_id=226835 B4U37_RS07110 WP_088017664.1 1368553..1369515(+) (ceuB) [Sutcliffiella horikoshii strain 20a]
MKKRYLFILLITLSFISLFVGVTEIQPWKLWQGISEQQLQILLLSRIPRLLSIIIAGIGMSVCGLIMQQLTRNKFVSPTT
AGTMDSARLGVLVSLLLFSSAGMLLKASIAFIFALAGTFIFMKILDRIKFKDVIFIPLVGLMFGSIVGSITTFFAYKYDL
IQNMSSWLQGNFSLIIKGRYELLYISIPLLIITYFYANRFTVAGMGEDFSINLGLPYKKVVNIGLVIVAAVTSIVILTVG
MIPFLGLIVPNIVSIFRGDHLKENLPYTAMIGAIFVLSCDILGRIIIYPYEIPIGLTVGVIGSALFLYLLFRRSTYEAKA

Nucleotide


Download         Length: 963 bp        

>NTDB_id=226835 B4U37_RS07110 WP_088017664.1 1368553..1369515(+) (ceuB) [Sutcliffiella horikoshii strain 20a]
ATGAAGAAAAGGTATCTGTTTATTTTGCTAATAACATTATCATTTATCTCTTTATTTGTTGGGGTAACTGAAATTCAACC
TTGGAAATTGTGGCAGGGAATAAGTGAACAGCAACTCCAGATTCTCTTGCTTAGTAGAATTCCGAGACTGCTAAGCATTA
TTATCGCCGGAATTGGAATGAGTGTTTGTGGCCTGATTATGCAGCAGCTGACTAGGAACAAGTTTGTCTCACCAACCACT
GCTGGAACAATGGACTCTGCAAGACTTGGAGTGTTAGTTTCCCTCCTGCTTTTTTCTTCTGCTGGAATGTTACTAAAGGC
CTCCATTGCTTTTATCTTTGCACTGGCAGGGACGTTTATTTTTATGAAAATTTTAGACAGGATAAAGTTCAAGGATGTTA
TTTTCATCCCGCTAGTGGGGCTAATGTTCGGAAGTATTGTAGGCTCCATCACTACATTTTTTGCTTATAAATATGACCTT
ATTCAAAATATGTCGTCTTGGTTGCAGGGGAATTTCTCCCTAATTATTAAAGGAAGATACGAGCTGCTTTACATAAGTAT
TCCATTGCTTATCATTACATATTTTTATGCAAACAGGTTTACCGTTGCAGGTATGGGAGAAGATTTCTCTATTAATCTAG
GATTGCCGTATAAAAAGGTAGTAAACATTGGACTTGTCATTGTGGCAGCTGTGACATCTATCGTCATCCTGACAGTAGGA
ATGATACCATTCCTTGGGCTGATTGTGCCAAATATTGTGAGTATCTTTCGGGGAGATCATCTAAAAGAGAATCTGCCATA
CACTGCAATGATTGGAGCAATCTTTGTCCTTTCATGCGATATTCTCGGTAGAATTATCATTTATCCTTACGAAATACCAA
TCGGTCTTACTGTCGGAGTAATAGGTAGTGCGTTATTTCTTTATCTTTTGTTTAGGAGAAGTACATATGAAGCTAAAGCA
TAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y0CKJ8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.548

98.125

0.516

Multiple sequence alignment