Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   B9C53_RS16700 Genome accession   NZ_CP020874
Coordinates   3426148..3426900 (+) Length   250 a.a.
NCBI ID   WP_012118107.1    Uniprot ID   A7Z796
Organism   Bacillus velezensis strain GYL4     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3421148..3431900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9C53_RS16685 (B9C53_16635) - 3421370..3421561 (-) 192 WP_007612879.1 hypothetical protein -
  B9C53_RS16690 (B9C53_16640) - 3422014..3424656 (+) 2643 WP_038459387.1 valine--tRNA ligase -
  B9C53_RS16695 (B9C53_16645) - 3424715..3426007 (+) 1293 WP_038459385.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  B9C53_RS16700 (B9C53_16650) comC 3426148..3426900 (+) 753 WP_012118107.1 prepilin peptidase Machinery gene
  B9C53_RS16705 (B9C53_16655) - 3427027..3428028 (+) 1002 WP_038459383.1 SPOR domain-containing protein -
  B9C53_RS16710 (B9C53_16660) - 3428169..3428738 (+) 570 WP_012118105.1 Maf family protein -
  B9C53_RS16715 (B9C53_16665) radC 3428770..3429465 (+) 696 WP_007408165.1 RadC family protein -
  B9C53_RS16720 (B9C53_16670) mreB 3429557..3430570 (+) 1014 WP_003152647.1 cell shape-determining protein MreB -
  B9C53_RS16725 (B9C53_16675) mreC 3430601..3431464 (+) 864 WP_007408166.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27219.94 Da        Isoelectric Point: 9.4293

>NTDB_id=226794 B9C53_RS16700 WP_012118107.1 3426148..3426900(+) (comC) [Bacillus velezensis strain GYL4]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSACSFCRLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTMTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGAVYGMCAAARGRLGKKQPFPFAPAISAGSALSYLYGEELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=226794 B9C53_RS16700 WP_012118107.1 3426148..3426900(+) (comC) [Bacillus velezensis strain GYL4]
GTGCTTTTGATTCTGTTTTTTCTCGGTTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTTCGAAT
CTCGGTTATTTCGCCGCGTTCAGCCTGTTCGTTTTGCCGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCGTCGTTTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCAAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCG
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTGCTCAT
GATTGTTACTATGACGGATCTGCAATATATGCTGATTCCTGACAAAGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GGCGTATGTTTTCTCCGCTGGATTCATGGTATGCAGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAGCCGTATACGGTATGTGCGCCGCAGCCCGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGTGAAGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGGGCTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z796

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

58.871

99.2

0.584

Multiple sequence alignment