Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   B9C53_RS11970 Genome accession   NZ_CP020874
Coordinates   2514463..2515608 (-) Length   381 a.a.
NCBI ID   WP_038464359.1    Uniprot ID   -
Organism   Bacillus velezensis strain GYL4     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2509463..2520608
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9C53_RS11920 (B9C53_11900) speE 2509758..2510588 (+) 831 WP_038464362.1 spermidine synthase -
  B9C53_RS11925 (B9C53_11905) speB 2510647..2511519 (+) 873 WP_007614448.1 agmatinase -
  B9C53_RS11930 (B9C53_11910) - 2511688..2511906 (+) 219 WP_003151056.1 helix-turn-helix transcriptional regulator -
  B9C53_RS11940 (B9C53_11920) - 2512497..2513009 (-) 513 WP_007614439.1 stage II sporulation protein M -
  B9C53_RS11945 (B9C53_11925) - 2513053..2513334 (-) 282 WP_007407643.1 hypothetical protein -
  B9C53_RS11950 (B9C53_11930) - 2513521..2513705 (-) 185 Protein_2288 DUF4177 domain-containing protein -
  B9C53_RS11955 (B9C53_11935) - 2513740..2513943 (-) 204 WP_007407641.1 hypothetical protein -
  B9C53_RS11960 (B9C53_11940) - 2513957..2514160 (-) 204 WP_003151064.1 helix-turn-helix transcriptional regulator -
  B9C53_RS11965 (B9C53_11945) - 2514360..2514479 (-) 120 WP_021494790.1 PhrC/PhrF family phosphatase-inhibitory pheromone -
  B9C53_RS11970 (B9C53_11950) rapF 2514463..2515608 (-) 1146 WP_038464359.1 tetratricopeptide repeat protein Regulator
  B9C53_RS11980 (B9C53_11960) - 2515839..2517194 (+) 1356 WP_038460212.1 YncE family protein -
  B9C53_RS11985 (B9C53_11965) - 2517234..2518610 (+) 1377 WP_038460210.1 YncE family protein -
  B9C53_RS11990 (B9C53_11970) - 2518617..2519129 (-) 513 Protein_2295 bacteriocin biosynthesis protein AlbG -
  B9C53_RS11995 (B9C53_11975) - 2519283..2519711 (+) 429 WP_032869448.1 DUF1934 domain-containing protein -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 45528.60 Da        Isoelectric Point: 4.6428

>NTDB_id=226777 B9C53_RS11970 WP_038464359.1 2514463..2515608(-) (rapF) [Bacillus velezensis strain GYL4]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAEYKLDFVKDCIEKAEFYFKMSESYYYMKQTYFS
MDYARQAYKIYHKQEAYNIRVLQCHSLFATNFLDLKQYDEAIQHFKKAYAMAEAEQQPQLMGRTLYNIGLCFNSQENYKP
AIDYIKRAIAVFEDGNIITSLPQAYFLITQIHYKIGNMAIARQYHDKGVSYAEKAEDSLYIAEYEFLESLYVGEPDEEAI
MECFDFLRDKSMYADLEDFALDVAKYYHDRENFEKASAYFLKVEETRQQIQGGVKLYEIEV

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=226777 B9C53_RS11970 WP_038464359.1 2514463..2515608(-) (rapF) [Bacillus velezensis strain GYL4]
GTGGCGAGTGTTTTATCATCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAACTTGCAGGTCTGGAAGATGATCAGGATCTTCATCTATACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGTCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAATATAAGCTTGATTTTG
TCAAAGATTGTATCGAGAAAGCTGAATTTTATTTTAAGATGTCAGAGTCCTACTATTATATGAAACAGACTTATTTTTCT
ATGGATTATGCCCGGCAGGCTTATAAAATTTATCATAAGCAGGAGGCATATAATATAAGGGTGCTTCAGTGCCATTCATT
GTTCGCTACCAACTTTCTTGACTTAAAGCAATATGATGAAGCAATTCAGCATTTTAAAAAGGCTTATGCCATGGCAGAGG
CAGAACAGCAGCCTCAATTAATGGGCCGGACTCTATATAATATCGGACTTTGTTTTAACAGCCAAGAAAATTACAAACCA
GCCATTGATTACATAAAACGGGCAATAGCTGTTTTTGAAGATGGGAACATCATCACTTCTCTCCCGCAAGCCTATTTCTT
AATCACACAAATACATTATAAAATCGGAAATATGGCCATAGCCAGACAATATCATGACAAAGGGGTATCTTATGCAGAGA
AGGCAGAAGATTCCCTATATATCGCTGAGTATGAATTTTTAGAATCTTTATATGTCGGTGAGCCTGATGAAGAAGCAATC
ATGGAATGTTTTGACTTTCTCAGAGATAAATCGATGTATGCTGATCTTGAAGATTTTGCCTTAGATGTGGCAAAATATTA
TCATGATAGAGAAAATTTCGAGAAGGCTTCCGCATATTTTTTAAAGGTGGAAGAAACAAGACAGCAGATTCAAGGAGGTG
TGAAGTTGTATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_12)

(189-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

78.478

100

0.785
  rapC Bacillus subtilis subsp. subtilis str. 168

56.053

99.738

0.559

Multiple sequence alignment