Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   B9C53_RS10140 Genome accession   NZ_CP020874
Coordinates   2159023..2160135 (-) Length   370 a.a.
NCBI ID   WP_007409910.1    Uniprot ID   -
Organism   Bacillus velezensis strain GYL4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2154023..2165135
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9C53_RS10125 (B9C53_10115) gyrA 2154112..2156571 (-) 2460 WP_032875298.1 DNA gyrase subunit A -
  B9C53_RS10130 (B9C53_10120) gyrB 2156787..2158703 (-) 1917 WP_007409911.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  B9C53_RS10135 (B9C53_10125) remB 2158760..2159005 (-) 246 WP_004392908.1 extracellular matrix regulator RemB -
  B9C53_RS10140 (B9C53_10130) recF 2159023..2160135 (-) 1113 WP_007409910.1 DNA replication/repair protein RecF Machinery gene
  B9C53_RS10145 (B9C53_10135) rlbA 2160151..2160366 (-) 216 WP_004392910.1 ribosome maturation protein RlbA -
  B9C53_RS10150 (B9C53_10140) dnaN 2160501..2161637 (-) 1137 WP_038463542.1 DNA polymerase III subunit beta -
  B9C53_RS10155 (B9C53_10145) dnaA 2161822..2163162 (-) 1341 WP_007409908.1 chromosomal replication initiator protein DnaA -
  B9C53_RS10160 (B9C53_10150) rpmH 2163784..2163918 (+) 135 WP_003178075.1 50S ribosomal protein L34 -
  B9C53_RS10165 (B9C53_10155) rnpA 2164073..2164423 (+) 351 WP_038464561.1 ribonuclease P protein component -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42430.36 Da        Isoelectric Point: 7.0882

>NTDB_id=226773 B9C53_RS10140 WP_007409910.1 2159023..2160135(-) (recF) [Bacillus velezensis strain GYL4]
MYIQNLELTSYRNYERAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDEDYAKIEGRVMKRNGD
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSAVYLYDLSLYQKILSQR
NHFLKQLQSRKQTDRTMLDVLTDQLIEAAAKVVAKRLQFTAQLEKWAQPIHSGISRGLEELTLKYHTALDVSDPKDLSKI
GNSYQESFSKLKEKEIERGVTLFGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHDTLHQAGMFRVENGTLVK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=226773 B9C53_RS10140 WP_007409910.1 2159023..2160135(-) (recF) [Bacillus velezensis strain GYL4]
TTGTATATCCAAAATTTAGAATTAACATCCTACCGTAATTATGAGCGCGCTGAGCTTCAATTCGAAAACAAGGTGAATGT
GATCATCGGGGAAAATGCCCAAGGCAAAACCAATCTAATGGAAGCCATCTATGTCCTTTCGATGGCAAAGTCACACCGCA
CCTCAAATGACAAAGAACTTATACGGTGGGACGAAGACTATGCTAAAATAGAAGGAAGAGTGATGAAGCGTAACGGGGAC
ATCCCGATGCAGCTTGTCATCTCCAAAAAAGGTAAAAAGGGCAAGGTCAATCATATAGAGCAGCAAAAACTCAGTCAGTA
TGTCGGAGCGCTGAACACCATTATGTTTGCCCCTGAGGATTTAAATCTCGTCAAAGGAAGCCCTCAGGTGAGGAGGAGAT
TTCTCGATATGGAGATCGGGCAGGTTTCTGCCGTTTATCTGTATGATTTATCTCTTTATCAAAAAATCCTTTCACAGCGG
AATCATTTTCTGAAACAGCTGCAAAGCCGGAAACAGACTGACCGGACTATGCTTGACGTTCTCACTGATCAGCTGATTGA
AGCAGCCGCAAAAGTTGTCGCCAAACGTCTGCAGTTTACGGCGCAGCTTGAAAAATGGGCGCAGCCGATCCATTCCGGCA
TTTCCCGGGGACTTGAAGAACTGACGCTTAAGTATCACACGGCGCTTGATGTATCAGATCCCAAAGATTTGTCGAAAATA
GGTAACAGCTACCAGGAGTCTTTTTCGAAATTAAAAGAAAAAGAAATAGAACGAGGCGTCACATTATTCGGACCGCATCG
GGATGATGTCCTTTTTTATGTGAACGGACGCGATGTGCAGACGTACGGTTCACAGGGACAGCAGCGTACGACGGCTTTGT
CTTTGAAGCTGGCCGAAATAGATTTGATTCATGAAGAAATCGGAGAATACCCCATTTTACTTTTGGATGATGTACTAAGC
GAGCTGGATGATTACCGACAGTCCCATTTGCTTCATACGATCCAAGGCCGTGTGCAGACATTTGTCACCACGACAAGCGT
GGATGGCATTGACCACGATACCTTACATCAAGCAGGAATGTTCCGTGTGGAAAACGGTACGTTAGTGAAGTGA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

94.324

100

0.943

Multiple sequence alignment