Detailed information
Bioinformatically predicted
Overview
| Name | recF | Type | Machinery gene |
| Locus tag | B9C53_RS10140 | Genome accession | NZ_CP020874 |
| Coordinates | 2159023..2160135 (-) | Length | 370 a.a. |
| NCBI ID | WP_007409910.1 | Uniprot ID | - |
| Organism | Bacillus velezensis strain GYL4 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2133852..2177987 | 2159023..2160135 | within | 0 |
Gene organization within MGE regions
Location: 2133852..2177987
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| B9C53_RS10025 (B9C53_10015) | dnaX | 2133852..2135543 (-) | 1692 | WP_003150701.1 | DNA polymerase III subunit gamma/tau | - |
| B9C53_RS10035 (B9C53_10025) | tadA | 2136026..2136508 (-) | 483 | WP_007615141.1 | tRNA adenosine(34) deaminase TadA | - |
| B9C53_RS10040 (B9C53_10030) | - | 2136630..2137142 (+) | 513 | WP_044803089.1 | isochorismatase family cysteine hydrolase | - |
| B9C53_RS10045 (B9C53_10035) | - | 2137208..2138497 (+) | 1290 | WP_193427913.1 | glycoside hydrolase family 18 protein | - |
| B9C53_RS10050 (B9C53_10040) | dgk | 2138593..2139216 (+) | 624 | WP_038456645.1 | deoxyguanosine kinase | - |
| B9C53_RS10055 (B9C53_10045) | dck | 2139213..2139866 (+) | 654 | WP_029974845.1 | deoxyadenosine/deoxycytidine kinase | - |
| B9C53_RS10065 (B9C53_10055) | - | 2140306..2141451 (+) | 1146 | WP_038456642.1 | glycerate kinase | - |
| B9C53_RS10070 (B9C53_10060) | serS | 2141462..2142739 (-) | 1278 | WP_007408744.1 | serine--tRNA ligase | - |
| B9C53_RS10075 (B9C53_10065) | pdxT | 2143059..2143649 (-) | 591 | WP_007615126.1 | pyridoxal 5'-phosphate synthase glutaminase subunit PdxT | - |
| B9C53_RS10080 (B9C53_10070) | pdxS | 2143671..2144555 (-) | 885 | WP_003150714.1 | pyridoxal 5'-phosphate synthase lyase subunit PdxS | - |
| B9C53_RS10085 (B9C53_10075) | dacA | 2144752..2146083 (-) | 1332 | WP_011996156.1 | D-alanyl-D-alanine carboxypeptidase | - |
| B9C53_RS10090 (B9C53_10080) | guaB | 2146236..2147702 (-) | 1467 | WP_038456638.1 | IMP dehydrogenase | - |
| B9C53_RS10095 (B9C53_10085) | - | 2147823..2148773 (+) | 951 | WP_038460628.1 | YaaC family protein | - |
| B9C53_RS10125 (B9C53_10115) | gyrA | 2154112..2156571 (-) | 2460 | WP_032875298.1 | DNA gyrase subunit A | - |
| B9C53_RS10130 (B9C53_10120) | gyrB | 2156787..2158703 (-) | 1917 | WP_007409911.1 | DNA topoisomerase (ATP-hydrolyzing) subunit B | - |
| B9C53_RS10135 (B9C53_10125) | remB | 2158760..2159005 (-) | 246 | WP_004392908.1 | extracellular matrix regulator RemB | - |
| B9C53_RS10140 (B9C53_10130) | recF | 2159023..2160135 (-) | 1113 | WP_007409910.1 | DNA replication/repair protein RecF | Machinery gene |
| B9C53_RS10145 (B9C53_10135) | rlbA | 2160151..2160366 (-) | 216 | WP_004392910.1 | ribosome maturation protein RlbA | - |
| B9C53_RS10150 (B9C53_10140) | dnaN | 2160501..2161637 (-) | 1137 | WP_038463542.1 | DNA polymerase III subunit beta | - |
| B9C53_RS10155 (B9C53_10145) | dnaA | 2161822..2163162 (-) | 1341 | WP_007409908.1 | chromosomal replication initiator protein DnaA | - |
| B9C53_RS10160 (B9C53_10150) | rpmH | 2163784..2163918 (+) | 135 | WP_003178075.1 | 50S ribosomal protein L34 | - |
| B9C53_RS10165 (B9C53_10155) | rnpA | 2164073..2164423 (+) | 351 | WP_038464561.1 | ribonuclease P protein component | - |
| B9C53_RS10170 (B9C53_10160) | spoIIIJ | 2164584..2165333 (+) | 750 | WP_007409906.1 | YidC family membrane integrase SpoIIIJ | - |
| B9C53_RS10175 (B9C53_10165) | jag | 2165330..2165971 (+) | 642 | WP_017418434.1 | RNA-binding cell elongation regulator Jag/EloR | - |
| B9C53_RS10180 (B9C53_10170) | mnmE | 2166261..2167640 (+) | 1380 | WP_007615094.1 | tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE | - |
| B9C53_RS10185 (B9C53_10175) | mnmG | 2167657..2169543 (+) | 1887 | WP_038464557.1 | tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG | - |
| B9C53_RS10190 (B9C53_10180) | rsmG | 2169557..2170276 (+) | 720 | WP_038460626.1 | 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG | - |
| B9C53_RS10195 (B9C53_10185) | noc | 2170398..2171249 (+) | 852 | WP_007615083.1 | nucleoid occlusion protein | - |
| B9C53_RS10200 (B9C53_10190) | soj | 2171549..2172310 (+) | 762 | WP_007409899.1 | sporulation initiation inhibitor protein Soj | - |
| B9C53_RS10205 (B9C53_10195) | - | 2172303..2173154 (+) | 852 | WP_038460623.1 | ParB/RepB/Spo0J family partition protein | - |
| B9C53_RS10210 (B9C53_10200) | yyaC | 2173184..2173798 (-) | 615 | WP_004392969.1 | spore protease YyaC | - |
| B9C53_RS10215 (B9C53_10205) | - | 2173973..2174476 (-) | 504 | WP_038460620.1 | GNAT family N-acetyltransferase | - |
| B9C53_RS10220 (B9C53_10210) | - | 2174620..2175645 (+) | 1026 | WP_087920784.1 | hypothetical protein | - |
| B9C53_RS10225 (B9C53_10215) | - | 2175731..2175937 (+) | 207 | WP_004392973.1 | DUF951 domain-containing protein | - |
| B9C53_RS10230 (B9C53_10220) | - | 2175984..2177987 (+) | 2004 | WP_038460617.1 | molybdopterin-dependent oxidoreductase | - |
Sequence
Protein
Download Length: 370 a.a. Molecular weight: 42430.36 Da Isoelectric Point: 7.0882
>NTDB_id=226773 B9C53_RS10140 WP_007409910.1 2159023..2160135(-) (recF) [Bacillus velezensis strain GYL4]
MYIQNLELTSYRNYERAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDEDYAKIEGRVMKRNGD
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSAVYLYDLSLYQKILSQR
NHFLKQLQSRKQTDRTMLDVLTDQLIEAAAKVVAKRLQFTAQLEKWAQPIHSGISRGLEELTLKYHTALDVSDPKDLSKI
GNSYQESFSKLKEKEIERGVTLFGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHDTLHQAGMFRVENGTLVK
MYIQNLELTSYRNYERAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDEDYAKIEGRVMKRNGD
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSAVYLYDLSLYQKILSQR
NHFLKQLQSRKQTDRTMLDVLTDQLIEAAAKVVAKRLQFTAQLEKWAQPIHSGISRGLEELTLKYHTALDVSDPKDLSKI
GNSYQESFSKLKEKEIERGVTLFGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHDTLHQAGMFRVENGTLVK
Nucleotide
Download Length: 1113 bp
>NTDB_id=226773 B9C53_RS10140 WP_007409910.1 2159023..2160135(-) (recF) [Bacillus velezensis strain GYL4]
TTGTATATCCAAAATTTAGAATTAACATCCTACCGTAATTATGAGCGCGCTGAGCTTCAATTCGAAAACAAGGTGAATGT
GATCATCGGGGAAAATGCCCAAGGCAAAACCAATCTAATGGAAGCCATCTATGTCCTTTCGATGGCAAAGTCACACCGCA
CCTCAAATGACAAAGAACTTATACGGTGGGACGAAGACTATGCTAAAATAGAAGGAAGAGTGATGAAGCGTAACGGGGAC
ATCCCGATGCAGCTTGTCATCTCCAAAAAAGGTAAAAAGGGCAAGGTCAATCATATAGAGCAGCAAAAACTCAGTCAGTA
TGTCGGAGCGCTGAACACCATTATGTTTGCCCCTGAGGATTTAAATCTCGTCAAAGGAAGCCCTCAGGTGAGGAGGAGAT
TTCTCGATATGGAGATCGGGCAGGTTTCTGCCGTTTATCTGTATGATTTATCTCTTTATCAAAAAATCCTTTCACAGCGG
AATCATTTTCTGAAACAGCTGCAAAGCCGGAAACAGACTGACCGGACTATGCTTGACGTTCTCACTGATCAGCTGATTGA
AGCAGCCGCAAAAGTTGTCGCCAAACGTCTGCAGTTTACGGCGCAGCTTGAAAAATGGGCGCAGCCGATCCATTCCGGCA
TTTCCCGGGGACTTGAAGAACTGACGCTTAAGTATCACACGGCGCTTGATGTATCAGATCCCAAAGATTTGTCGAAAATA
GGTAACAGCTACCAGGAGTCTTTTTCGAAATTAAAAGAAAAAGAAATAGAACGAGGCGTCACATTATTCGGACCGCATCG
GGATGATGTCCTTTTTTATGTGAACGGACGCGATGTGCAGACGTACGGTTCACAGGGACAGCAGCGTACGACGGCTTTGT
CTTTGAAGCTGGCCGAAATAGATTTGATTCATGAAGAAATCGGAGAATACCCCATTTTACTTTTGGATGATGTACTAAGC
GAGCTGGATGATTACCGACAGTCCCATTTGCTTCATACGATCCAAGGCCGTGTGCAGACATTTGTCACCACGACAAGCGT
GGATGGCATTGACCACGATACCTTACATCAAGCAGGAATGTTCCGTGTGGAAAACGGTACGTTAGTGAAGTGA
TTGTATATCCAAAATTTAGAATTAACATCCTACCGTAATTATGAGCGCGCTGAGCTTCAATTCGAAAACAAGGTGAATGT
GATCATCGGGGAAAATGCCCAAGGCAAAACCAATCTAATGGAAGCCATCTATGTCCTTTCGATGGCAAAGTCACACCGCA
CCTCAAATGACAAAGAACTTATACGGTGGGACGAAGACTATGCTAAAATAGAAGGAAGAGTGATGAAGCGTAACGGGGAC
ATCCCGATGCAGCTTGTCATCTCCAAAAAAGGTAAAAAGGGCAAGGTCAATCATATAGAGCAGCAAAAACTCAGTCAGTA
TGTCGGAGCGCTGAACACCATTATGTTTGCCCCTGAGGATTTAAATCTCGTCAAAGGAAGCCCTCAGGTGAGGAGGAGAT
TTCTCGATATGGAGATCGGGCAGGTTTCTGCCGTTTATCTGTATGATTTATCTCTTTATCAAAAAATCCTTTCACAGCGG
AATCATTTTCTGAAACAGCTGCAAAGCCGGAAACAGACTGACCGGACTATGCTTGACGTTCTCACTGATCAGCTGATTGA
AGCAGCCGCAAAAGTTGTCGCCAAACGTCTGCAGTTTACGGCGCAGCTTGAAAAATGGGCGCAGCCGATCCATTCCGGCA
TTTCCCGGGGACTTGAAGAACTGACGCTTAAGTATCACACGGCGCTTGATGTATCAGATCCCAAAGATTTGTCGAAAATA
GGTAACAGCTACCAGGAGTCTTTTTCGAAATTAAAAGAAAAAGAAATAGAACGAGGCGTCACATTATTCGGACCGCATCG
GGATGATGTCCTTTTTTATGTGAACGGACGCGATGTGCAGACGTACGGTTCACAGGGACAGCAGCGTACGACGGCTTTGT
CTTTGAAGCTGGCCGAAATAGATTTGATTCATGAAGAAATCGGAGAATACCCCATTTTACTTTTGGATGATGTACTAAGC
GAGCTGGATGATTACCGACAGTCCCATTTGCTTCATACGATCCAAGGCCGTGTGCAGACATTTGTCACCACGACAAGCGT
GGATGGCATTGACCACGATACCTTACATCAAGCAGGAATGTTCCGTGTGGAAAACGGTACGTTAGTGAAGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| recF | Bacillus subtilis subsp. subtilis str. 168 |
94.324 |
100 |
0.943 |