Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   B9C53_RS09910 Genome accession   NZ_CP020874
Coordinates   2117328..2117618 (+) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus velezensis strain GYL4     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2112328..2122618
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9C53_RS09895 (B9C53_09885) - 2112549..2113874 (-) 1326 WP_023356663.1 G5 and 3D domain-containing protein -
  B9C53_RS09900 (B9C53_09890) - 2114009..2114776 (-) 768 WP_032872179.1 TatD family hydrolase -
  B9C53_RS09905 (B9C53_09895) metG 2114853..2116844 (-) 1992 WP_022552471.1 methionine--tRNA ligase -
  B9C53_RS09910 (B9C53_09900) abrB 2117328..2117618 (+) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  B9C53_RS09915 (B9C53_09905) rsmI 2117668..2118549 (-) 882 WP_038463560.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  B9C53_RS09920 (B9C53_09910) - 2118524..2118823 (-) 300 WP_038456669.1 GIY-YIG nuclease family protein -
  B9C53_RS09925 (B9C53_09915) - 2118810..2119553 (-) 744 WP_038456667.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  B9C53_RS09930 (B9C53_09920) yabA 2119614..2119973 (-) 360 WP_004264720.1 replication initiation-control protein YabA -
  B9C53_RS09935 (B9C53_09925) ricT 2119988..2120815 (-) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  B9C53_RS09940 (B9C53_09930) holB 2120818..2121807 (-) 990 WP_108654937.1 DNA polymerase III subunit delta' -
  B9C53_RS09945 (B9C53_09935) - 2121819..2122259 (-) 441 WP_004264730.1 YaaR family protein -
  B9C53_RS09950 (B9C53_09940) darA 2122272..2122601 (-) 330 WP_004264734.1 cyclic di-AMP receptor DarA -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=226771 B9C53_RS09910 WP_169510469.1 2117328..2117618(+) (abrB) [Bacillus velezensis strain GYL4]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=226771 B9C53_RS09910 WP_169510469.1 2117328..2117618(+) (abrB) [Bacillus velezensis strain GYL4]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTAGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979

Multiple sequence alignment