Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   B9C53_RS08345 Genome accession   NZ_CP020874
Coordinates   1829845..1830243 (+) Length   132 a.a.
NCBI ID   WP_038456919.1    Uniprot ID   -
Organism   Bacillus velezensis strain GYL4     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1824845..1835243
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9C53_RS08325 (B9C53_08315) - 1827247..1827609 (-) 363 WP_007409352.1 winged helix-turn-helix transcriptional regulator -
  B9C53_RS08330 (B9C53_08320) hxlA 1827841..1828476 (+) 636 WP_014416875.1 3-hexulose-6-phosphate synthase -
  B9C53_RS08335 (B9C53_08325) hxlB 1828473..1829030 (+) 558 WP_038456922.1 6-phospho-3-hexuloisomerase -
  B9C53_RS08340 (B9C53_08330) nucA/comI 1829387..1829824 (+) 438 WP_038456921.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  B9C53_RS08345 (B9C53_08335) nin/comJ 1829845..1830243 (+) 399 WP_038456919.1 competence protein ComJ Regulator
  B9C53_RS08350 (B9C53_08340) - 1830398..1830676 (-) 279 WP_263612330.1 YckD family protein -
  B9C53_RS08355 (B9C53_08345) - 1830793..1831227 (-) 435 WP_094031491.1 RDD family protein -
  B9C53_RS08360 (B9C53_08350) - 1831242..1832378 (-) 1137 WP_094031490.1 zinc-dependent alcohol dehydrogenase -
  B9C53_RS08365 (B9C53_08355) - 1832443..1833645 (-) 1203 WP_069007411.1 GTP-binding protein -
  B9C53_RS08370 (B9C53_08360) - 1833834..1835039 (-) 1206 WP_014416869.1 MFS transporter -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 15090.19 Da        Isoelectric Point: 5.2470

>NTDB_id=226767 B9C53_RS08345 WP_038456919.1 1829845..1830243(+) (nin/comJ) [Bacillus velezensis strain GYL4]
MIKSWKPQELAISYHQFTIFQKDSEPPVIDWTDEAIEKGYAEADRAVSFEARRNTRAFIVLRLNTSEPVPSYEKKATVPF
EAVKDGIEIESVMSKRLFFHIPKGRYTLTCYSVPAEISDLHADTYIIDAAAM

Nucleotide


Download         Length: 399 bp        

>NTDB_id=226767 B9C53_RS08345 WP_038456919.1 1829845..1830243(+) (nin/comJ) [Bacillus velezensis strain GYL4]
TTGATTAAATCATGGAAACCGCAAGAACTGGCCATTTCTTATCATCAATTTACAATCTTCCAAAAAGATTCAGAGCCGCC
TGTTATCGATTGGACCGATGAAGCCATTGAAAAAGGATATGCGGAAGCTGACAGAGCTGTTTCATTTGAGGCAAGGAGAA
ATACGAGGGCATTTATCGTTCTCAGGCTTAACACAAGTGAACCGGTACCATCCTATGAGAAAAAAGCGACTGTTCCCTTT
GAGGCTGTAAAAGATGGAATTGAGATTGAAAGCGTGATGTCAAAGCGGCTTTTCTTTCATATTCCGAAAGGCCGATACAC
CCTTACCTGTTATTCAGTGCCTGCCGAAATATCCGATCTTCATGCGGATACGTATATAATTGATGCAGCCGCAATGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

75

100

0.75

Multiple sequence alignment