Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   B9C53_RS04765 Genome accession   NZ_CP020874
Coordinates   1057783..1058361 (-) Length   192 a.a.
NCBI ID   WP_003155179.1    Uniprot ID   G1BIW7
Organism   Bacillus velezensis strain GYL4     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1052783..1063361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9C53_RS04730 (B9C53_04695) - 1052974..1054443 (+) 1470 WP_038457538.1 sodium:solute symporter -
  B9C53_RS04735 (B9C53_04700) - 1054485..1054802 (+) 318 WP_003155166.1 YbjQ family protein -
  B9C53_RS04740 (B9C53_04705) - 1054835..1055104 (-) 270 WP_038457536.1 excalibur calcium-binding domain-containing protein -
  B9C53_RS04745 (B9C53_04710) - 1055300..1056010 (+) 711 WP_029325960.1 YrpD family protein -
  B9C53_RS04750 (B9C53_04715) - 1056239..1056748 (-) 510 WP_038457534.1 MepB family protein -
  B9C53_RS04755 (B9C53_04720) - 1056871..1057242 (-) 372 WP_038457532.1 iron chaperone -
  B9C53_RS04760 (B9C53_04725) - 1057269..1057637 (-) 369 WP_012117235.1 iron chaperone -
  B9C53_RS04765 (B9C53_04730) comK 1057783..1058361 (-) 579 WP_003155179.1 competence protein ComK Regulator
  B9C53_RS04770 (B9C53_04735) - 1058677..1058910 (+) 234 WP_032874382.1 IDEAL domain-containing protein -
  B9C53_RS04775 (B9C53_04740) - 1058941..1059798 (-) 858 WP_038457531.1 SDR family oxidoreductase -
  B9C53_RS04780 (B9C53_04745) - 1059923..1061446 (+) 1524 WP_038457530.1 FAD-dependent oxidoreductase -
  B9C53_RS20015 - 1061680..1062054 (+) 375 Protein_951 protoglobin domain-containing protein -
  B9C53_RS20020 - 1062064..1062861 (+) 798 WP_411674888.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22315.58 Da        Isoelectric Point: 8.1419

>NTDB_id=226756 B9C53_RS04765 WP_003155179.1 1057783..1058361(-) (comK) [Bacillus velezensis strain GYL4]
MCQKTHAPLESYEVNRSTIAVLPEEIDGKMGSKVIEKDCILYVSMKPIHIIDRSCRYFGSSYAGRKAGTYEAIKISHKPP
IMVDPSNHIFLFPTLSSARPQCGWISHVHVKDFQPTAFDDTAVTFSNGKTMELEVSYHSFENQVYRTAYLRTTFQDRMGS
HIPKRQEFMLYPKEERTRMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=226756 B9C53_RS04765 WP_003155179.1 1057783..1058361(-) (comK) [Bacillus velezensis strain GYL4]
ATGTGCCAGAAAACACACGCACCCTTAGAAAGCTATGAAGTAAATCGTTCAACCATCGCTGTTTTGCCTGAGGAAATAGA
CGGTAAAATGGGGTCGAAGGTCATTGAAAAAGACTGCATTCTGTATGTCAGCATGAAGCCGATTCACATCATCGACAGAA
GCTGCCGCTACTTTGGCTCCAGCTATGCCGGGAGAAAAGCGGGAACATATGAAGCGATTAAAATTTCTCACAAGCCGCCG
ATTATGGTGGACCCTTCAAATCACATCTTTTTATTCCCTACACTTTCTTCTGCAAGGCCTCAATGCGGCTGGATATCGCA
TGTGCACGTTAAAGATTTTCAACCGACGGCATTTGATGACACAGCGGTCACGTTCTCAAACGGCAAAACGATGGAACTGG
AAGTATCCTATCATTCTTTTGAAAATCAGGTTTACAGAACCGCCTATCTCAGAACCACTTTTCAGGACAGGATGGGCAGT
CATATCCCGAAGCGGCAGGAATTCATGCTGTATCCGAAAGAAGAGCGGACAAGAATGATCTACGACTTTATTTTGCGGGA
GCTGGGGGAGAGATATTAG

Domains

Predicted by InterProScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

82.292

100

0.823

Multiple sequence alignment