Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   B9H02_RS08255 Genome accession   NZ_CP020873
Coordinates   1745551..1746744 (-) Length   397 a.a.
NCBI ID   WP_085659966.1    Uniprot ID   -
Organism   Prosthecochloris sp. HL-130-GSB     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1740551..1751744
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9H02_RS08230 (B9H02_08230) trpB 1740962..1742164 (+) 1203 WP_085659964.1 tryptophan synthase subunit beta -
  B9H02_RS08245 (B9H02_08245) - 1743427..1744590 (-) 1164 WP_085660633.1 Fic family protein -
  B9H02_RS08250 (B9H02_08250) - 1744883..1745509 (-) 627 WP_085659965.1 class I SAM-dependent methyltransferase -
  B9H02_RS08255 (B9H02_08255) cqsA 1745551..1746744 (-) 1194 WP_085659966.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  B9H02_RS08260 (B9H02_08260) - 1747027..1749552 (+) 2526 WP_085659967.1 hybrid sensor histidine kinase/response regulator -
  B9H02_RS08265 (B9H02_08265) - 1749556..1750281 (+) 726 WP_085659968.1 type 1 glutamine amidotransferase -
  B9H02_RS08270 (B9H02_08270) - 1750424..1751584 (+) 1161 WP_085660634.1 cation:proton antiporter -

Sequence

Protein


Download         Length: 397 a.a.        Molecular weight: 43746.93 Da        Isoelectric Point: 6.6020

>NTDB_id=226734 B9H02_RS08255 WP_085659966.1 1745551..1746744(-) (cqsA) [Prosthecochloris sp. HL-130-GSB]
MPGFVEKKLQKCEEETFRPRKNHKPLVLGNVVPGPGAIILQSNDYLNISKHPGIIDAQVSVLSEQGKDLVMSAVFMHEGT
SKQRFEKAMGEFAGFENSILCQSGWAANVGLLQVIGDESIPVYIDFFTHMSLWEGIKTAGAPAISFRHNDYRHLERLVKE
HGPGIILVDSLYSTIGDIAPLPEIVGIGRRYGCAIVVDESHSLGTHGEHGAGLVNQYGLTGDVHFITGSLAKAFAGRAGI
ILCSDHFARYYPYLAFPAIFSSTLLPYEIAGLHKTLEVIKAGDDRRVRLHEKSAFLRDGLRQLGYNIASSSQIIAVESGF
EHDTEAFRDALEERNVFGSVFLTPATPKNRSLMRFSLHCDITPAELEYVLNVCAEVRDEVSMWEWKSTIKGGGRGKS

Nucleotide


Download         Length: 1194 bp        

>NTDB_id=226734 B9H02_RS08255 WP_085659966.1 1745551..1746744(-) (cqsA) [Prosthecochloris sp. HL-130-GSB]
TTGCCTGGTTTTGTTGAAAAAAAACTGCAGAAATGCGAAGAAGAGACATTTCGTCCCCGTAAAAATCACAAGCCTCTTGT
TCTTGGCAATGTCGTGCCCGGTCCTGGCGCAATCATACTTCAAAGTAACGATTATCTGAATATATCTAAGCATCCCGGTA
TTATCGATGCACAGGTATCGGTGCTTTCAGAGCAAGGTAAGGACCTTGTGATGTCGGCAGTGTTCATGCACGAAGGCACG
TCGAAGCAGAGGTTCGAAAAGGCAATGGGGGAATTTGCCGGATTTGAGAATTCGATTCTCTGCCAGTCCGGATGGGCGGC
CAATGTCGGTCTGCTACAGGTGATAGGTGATGAATCCATACCGGTCTACATCGATTTTTTTACCCATATGTCTCTGTGGG
AGGGGATCAAAACTGCCGGAGCACCGGCTATTTCATTCAGGCACAATGATTACCGTCACCTCGAGCGCCTTGTCAAAGAG
CATGGGCCCGGTATCATTCTTGTCGATTCCCTCTACAGCACCATTGGCGATATTGCGCCCCTGCCGGAAATCGTCGGGAT
CGGCAGACGCTATGGTTGTGCTATCGTAGTAGACGAATCCCACTCACTCGGTACTCATGGGGAACACGGTGCAGGCCTTG
TCAACCAGTACGGTTTGACCGGAGATGTCCATTTCATTACCGGCAGTCTTGCAAAAGCTTTTGCCGGCCGTGCAGGCATT
ATCCTCTGCTCTGACCATTTTGCCAGGTATTACCCCTACCTTGCCTTCCCGGCGATTTTCAGTTCAACCCTGCTGCCATA
CGAAATTGCCGGATTGCATAAAACTCTCGAGGTCATCAAGGCCGGTGACGATCGGCGCGTAAGGTTGCATGAAAAATCAG
CCTTTTTGCGGGACGGATTGCGCCAACTGGGATACAATATCGCCAGTTCTTCACAGATCATTGCCGTTGAAAGTGGATTT
GAGCATGACACGGAAGCTTTTCGCGATGCCCTCGAAGAACGAAATGTTTTCGGCTCTGTTTTTTTGACTCCGGCAACCCC
GAAAAACCGTTCCCTCATGCGCTTTTCTCTTCATTGTGATATTACCCCTGCAGAGCTTGAGTACGTGTTGAACGTATGCG
CCGAGGTTCGTGACGAGGTCAGCATGTGGGAGTGGAAATCCACCATTAAAGGAGGAGGAAGAGGCAAATCATGA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(38-371)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

51.467

94.458

0.486

Multiple sequence alignment