Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   CCUN_RS08355 Genome accession   NZ_CP020867
Coordinates   1676911..1677645 (-) Length   244 a.a.
NCBI ID   WP_027305521.1    Uniprot ID   -
Organism   Campylobacter cuniculorum DSM 23162 = LMG 24588     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1671911..1682645
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCUN_RS08315 (CCUN_1668) pgsA 1672437..1672964 (+) 528 WP_027305513.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  CCUN_RS08320 (CCUN_1669) rseP 1672961..1674064 (+) 1104 WP_027305514.1 RIP metalloprotease RseP -
  CCUN_RS08325 (CCUN_1670) rpsF 1674251..1674628 (+) 378 WP_027305515.1 30S ribosomal protein S6 -
  CCUN_RS08330 (CCUN_1671) - 1674636..1675133 (+) 498 WP_027305516.1 single-stranded DNA-binding protein -
  CCUN_RS08335 (CCUN_1672) rpsR 1675150..1675410 (+) 261 WP_027305517.1 30S ribosomal protein S18 -
  CCUN_RS08340 (CCUN_1673) - 1675477..1675929 (-) 453 WP_027305518.1 hypothetical protein -
  CCUN_RS08345 (CCUN_1674) - 1675926..1676618 (-) 693 WP_027305519.1 hypothetical protein -
  CCUN_RS08350 (CCUN_1675) - 1676615..1676914 (-) 300 WP_027305520.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  CCUN_RS08355 (CCUN_1676) proC 1676911..1677645 (-) 735 WP_027305521.1 pyrroline-5-carboxylate reductase Machinery gene
  CCUN_RS08360 (CCUN_1677) fliW 1677645..1678052 (-) 408 WP_027305522.1 flagellar assembly protein FliW -
  CCUN_RS08365 (CCUN_1678) bamD 1678243..1678890 (+) 648 WP_027305523.1 outer membrane protein assembly factor BamD -
  CCUN_RS08370 (CCUN_1679) lon 1678900..1681275 (+) 2376 WP_027305524.1 endopeptidase La -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 26725.36 Da        Isoelectric Point: 9.5266

>NTDB_id=226689 CCUN_RS08355 WP_027305521.1 1676911..1677645(-) (proC) [Campylobacter cuniculorum DSM 23162 = LMG 24588]
MPKVYILANGAMASALAYGLRDKYEVFIVGRDKSKLKILKEQGFKTLLYEDFDLESKVVILAFKPYALKNVAQILKGEAK
ILISVLANTDFKELECIKAKNTIRIMPNIAARYKASTTPYILKNSKFKDEILNLLNTFGKAYELSDSSQMNAAMAISGCA
PAFLALVAQSIAEGGVYKGLTKDLSLNLTQGLFESVNALLKHEHPALIKENICSPAGVTIKGIKALEEKAVRAAFIEAID
RSSE

Nucleotide


Download         Length: 735 bp        

>NTDB_id=226689 CCUN_RS08355 WP_027305521.1 1676911..1677645(-) (proC) [Campylobacter cuniculorum DSM 23162 = LMG 24588]
ATGCCAAAAGTGTATATACTTGCAAATGGAGCAATGGCAAGTGCTTTAGCTTATGGTTTGCGTGATAAATATGAAGTTTT
TATAGTTGGACGCGATAAATCAAAGCTTAAAATTTTAAAAGAGCAAGGCTTTAAAACCTTGCTTTATGAGGATTTTGATT
TAGAATCTAAGGTGGTTATTTTAGCTTTTAAACCCTATGCACTCAAAAATGTGGCTCAAATTTTAAAGGGTGAGGCTAAA
ATTTTAATATCTGTTTTAGCAAATACAGATTTTAAAGAATTAGAATGCATCAAGGCAAAAAACACTATAAGAATTATGCC
AAATATTGCTGCAAGATACAAAGCCTCCACAACCCCTTATATCCTTAAAAATTCAAAATTTAAAGATGAGATTCTCAATT
TACTCAATACTTTTGGTAAGGCTTATGAATTAAGTGATTCTTCACAAATGAATGCTGCAATGGCAATCAGCGGTTGTGCC
CCTGCTTTTTTAGCCTTAGTGGCTCAAAGCATTGCTGAAGGAGGGGTTTATAAAGGTTTGACAAAGGATTTAAGCCTTAA
TTTAACTCAAGGGCTTTTTGAAAGTGTTAATGCTCTTTTAAAACATGAGCATCCTGCTTTGATTAAAGAAAATATTTGCT
CTCCAGCAGGTGTAACGATAAAAGGCATTAAAGCCTTAGAAGAAAAAGCCGTGCGTGCAGCTTTTATTGAAGCTATAGAC
CGAAGCTCTGAATGA

Domains

Predicted by InterproScan.

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(3-87)

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(148-242)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

70.417

98.361

0.693

Multiple sequence alignment