Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   CCUN_RS06470 Genome accession   NZ_CP020867
Coordinates   1296870..1297799 (-) Length   309 a.a.
NCBI ID   WP_027305363.1    Uniprot ID   A0A1W6BXV9
Organism   Campylobacter cuniculorum DSM 23162 = LMG 24588     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1291870..1302799
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCUN_RS06450 (CCUN_1287) - 1292201..1292665 (-) 465 WP_027305366.1 low molecular weight protein-tyrosine-phosphatase -
  CCUN_RS06455 (CCUN_1288) - 1292721..1293905 (+) 1185 WP_027305365.1 MFS transporter -
  CCUN_RS06460 (CCUN_1289) - 1294132..1295271 (-) 1140 WP_027305364.1 hypothetical protein -
  CCUN_RS06465 (CCUN_1290) - 1295281..1296768 (-) 1488 WP_085296664.1 MBOAT family O-acyltransferase -
  CCUN_RS06470 (CCUN_1291) waaF 1296870..1297799 (-) 930 WP_027305363.1 lipopolysaccharide heptosyltransferase II Regulator
  CCUN_RS06475 (CCUN_1292) - 1298708..1299307 (-) 600 WP_027305362.1 bacteriohemerythrin -
  CCUN_RS06480 (CCUN_1293) - 1299432..1300100 (+) 669 WP_027305361.1 response regulator transcription factor -
  CCUN_RS06485 (CCUN_1294) - 1300087..1301319 (+) 1233 WP_027305360.1 HAMP domain-containing sensor histidine kinase -

Sequence

Protein


Download         Length: 309 a.a.        Molecular weight: 35593.82 Da        Isoelectric Point: 10.0352

>NTDB_id=226684 CCUN_RS06470 WP_027305363.1 1296870..1297799(-) (waaF) [Campylobacter cuniculorum DSM 23162 = LMG 24588]
MKIFINLPTWLGDSVMASAAIYALKEHFKDAHFVFYGSFVSTELFKNFQNSSILVEDKTQRYSKILKIRGKLGEFDYALS
FRSAFSSKIVLKLIKTKQRFFFDKYKFKNEHQVLKYLYFVENTFDFKASSQDLKLPILPRFTQTKILALNPGAHYGSAKR
WEPSYFAEVAKFFANTHKILIFGAGDEQELCDEIEQILKKSEIRVKNLCNKTSIRSLCKNISMCDILVTNDSGPMHIGAV
YKIKTLAVFGPTLWTQTSPWKNPNAKIVRLGLPCSPCMQKTCPLLHHQCMKDLKPEFVIKEIKKLLEKA

Nucleotide


Download         Length: 930 bp        

>NTDB_id=226684 CCUN_RS06470 WP_027305363.1 1296870..1297799(-) (waaF) [Campylobacter cuniculorum DSM 23162 = LMG 24588]
ATGAAAATTTTTATCAATCTTCCCACTTGGTTAGGCGATAGCGTGATGGCAAGTGCTGCAATTTACGCTTTAAAAGAGCA
TTTTAAAGACGCTCATTTCGTATTTTATGGCTCTTTTGTCAGCACAGAACTTTTTAAGAATTTTCAAAATTCAAGCATTT
TAGTAGAGGATAAAACGCAAAGATATTCTAAAATTTTAAAAATTCGCGGAAAACTTGGAGAATTTGACTATGCTTTGAGT
TTTCGCTCGGCTTTTTCAAGTAAAATTGTTTTAAAACTCATCAAAACCAAACAAAGATTTTTTTTTGATAAATATAAATT
TAAAAATGAACATCAGGTTTTAAAATATCTTTATTTTGTAGAAAATACTTTTGATTTTAAAGCCTCATCGCAAGATTTAA
AACTCCCTATCTTACCGAGATTTACTCAAACTAAAATTTTAGCCTTAAATCCCGGAGCACATTATGGAAGTGCCAAAAGA
TGGGAGCCGAGTTATTTTGCTGAAGTGGCAAAATTTTTTGCAAATACGCATAAGATTTTAATTTTTGGTGCAGGAGATGA
ACAAGAGCTTTGCGATGAAATTGAGCAAATTTTAAAAAAATCAGAGATAAGGGTTAAAAATTTATGCAATAAAACAAGCA
TTCGTTCCCTTTGTAAAAACATTTCAATGTGCGATATTTTGGTGACCAATGATAGCGGTCCTATGCATATTGGTGCGGTT
TATAAAATCAAAACTCTTGCAGTTTTTGGACCCACACTTTGGACCCAAACCTCTCCTTGGAAAAATCCAAATGCTAAAAT
TGTGCGTTTGGGTTTGCCTTGCTCTCCTTGTATGCAAAAAACTTGTCCGCTTTTACATCATCAATGTATGAAAGACTTAA
AACCCGAATTTGTGATTAAAGAAATTAAAAAACTCCTTGAAAAAGCTTAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(108-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1W6BXV9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.038

100

0.657

Multiple sequence alignment