Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   B9D94_RS09230 Genome accession   NZ_CP020866
Coordinates   1629753..1630706 (+) Length   317 a.a.
NCBI ID   WP_006211446.1    Uniprot ID   W4AU66
Organism   Paenibacillus sp. Cedars     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1624753..1635706
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9D94_RS09210 (B9D94_09260) - 1625498..1625986 (+) 489 WP_063456014.1 sigma-70 family RNA polymerase sigma factor -
  B9D94_RS09215 (B9D94_09265) - 1625979..1626332 (+) 354 WP_148246882.1 hypothetical protein -
  B9D94_RS09220 (B9D94_09270) - 1626310..1628556 (+) 2247 WP_172963929.1 carboxypeptidase-like regulatory domain-containing protein -
  B9D94_RS09225 (B9D94_09275) - 1628658..1629260 (-) 603 WP_006211447.1 nitroreductase family protein -
  B9D94_RS09230 (B9D94_09280) ceuB 1629753..1630706 (+) 954 WP_006211446.1 ABC transporter permease Machinery gene
  B9D94_RS09235 (B9D94_09285) - 1630696..1631643 (+) 948 WP_006211445.1 iron chelate uptake ABC transporter family permease subunit -
  B9D94_RS09240 (B9D94_09290) - 1631640..1632398 (+) 759 WP_036641932.1 ABC transporter ATP-binding protein -
  B9D94_RS09245 (B9D94_09295) - 1632608..1633582 (+) 975 WP_148246884.1 siderophore ABC transporter substrate-binding protein -
  B9D94_RS09250 (B9D94_09300) - 1633781..1635205 (+) 1425 WP_148246885.1 NAD-dependent succinate-semialdehyde dehydrogenase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34918.36 Da        Isoelectric Point: 10.0237

>NTDB_id=226647 B9D94_RS09230 WP_006211446.1 1629753..1630706(+) (ceuB) [Paenibacillus sp. Cedars]
MKIRYLFAAVVVLSIISLFIGVKDISPLELFSMSEQQQHIMLVSRIPRLVSLILAGVSMSICGLIMQQLSRNKFVSPTTA
GTMDSARLGILVAMLVFTTSGPLIKMLVAFVFALAGTFIFMKILDRIKFKDAIFIPLVGLMFGNIVSSIATFFAYKYDLI
QNMSAWLQGDFSMIIKGQYEMLYISIPLVILAYLFANKFTVAGMGEEFATNLGLKYRRVVNLGLVIVALVTASVVLTVGV
IPFLGLIIPNIVSLYLGDHLKKSLSHTALLGAGFVLFCDILGRIIIYPYEIPISLTVGVLGSGIFIFLLMRRKAYDL

Nucleotide


Download         Length: 954 bp        

>NTDB_id=226647 B9D94_RS09230 WP_006211446.1 1629753..1630706(+) (ceuB) [Paenibacillus sp. Cedars]
ATGAAGATTAGATACTTATTTGCAGCCGTTGTGGTACTCTCCATAATCTCATTATTTATTGGAGTTAAGGACATTTCACC
ACTGGAACTGTTCTCCATGTCAGAACAACAACAACATATTATGCTTGTCAGCCGGATCCCGAGGCTTGTCAGTCTTATAC
TGGCAGGGGTCAGCATGAGTATCTGCGGATTGATCATGCAGCAGTTAAGTCGCAACAAATTCGTGTCACCAACAACAGCG
GGTACGATGGATTCCGCGAGACTTGGAATTTTGGTTGCCATGCTGGTCTTCACAACAAGCGGTCCACTAATCAAGATGCT
TGTGGCATTTGTATTCGCACTAGCGGGAACCTTCATCTTTATGAAGATCCTGGACCGGATCAAGTTCAAGGACGCCATCT
TTATTCCCCTCGTTGGACTGATGTTCGGTAATATTGTTAGTTCGATAGCAACCTTCTTTGCTTACAAATATGATCTTATT
CAGAATATGTCCGCATGGCTCCAGGGTGATTTCTCCATGATCATCAAGGGACAATATGAAATGCTATATATTAGTATCCC
GCTTGTCATTCTGGCCTACCTGTTCGCTAACAAGTTTACGGTAGCCGGGATGGGAGAGGAGTTTGCAACGAACCTTGGTC
TCAAGTACCGGAGAGTTGTGAACCTGGGATTGGTCATTGTAGCGCTGGTCACCGCATCCGTCGTTCTAACCGTCGGCGTG
ATTCCTTTTCTCGGTCTGATCATACCTAATATCGTTAGCCTGTATCTGGGAGATCACTTGAAAAAAAGCCTTTCGCATAC
CGCGCTGCTGGGGGCCGGATTCGTATTGTTCTGTGACATCCTTGGCAGGATCATCATTTATCCCTATGAGATTCCAATCA
GCCTGACCGTGGGCGTCCTTGGAAGCGGTATATTCATTTTCTTACTGATGAGGAGAAAGGCTTATGACTTATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB W4AU66

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

54.286

99.369

0.539

Multiple sequence alignment