Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CTC_RS00360 Genome accession   NC_004557
Coordinates   65777..66214 (+) Length   145 a.a.
NCBI ID   WP_011098432.1    Uniprot ID   A0A4Q0VB51
Organism   Clostridium tetani E88     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 60777..71214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CTC_RS00325 (CTC00103) - 60963..61820 (+) 858 WP_011098427.1 ParB/RepB/Spo0J family partition protein -
  CTC_RS00330 (CTC00104) - 61860..62357 (+) 498 WP_011098428.1 DUF4446 family protein -
  CTC_RS00335 (CTC00105) yyaC 62379..62954 (-) 576 WP_011098429.1 spore protease YyaC -
  CTC_RS00340 (CTC00106) ytvI 63010..64065 (-) 1056 WP_011098430.1 sporulation integral membrane protein YtvI -
  CTC_RS00345 (CTC00107) - 64302..65186 (+) 885 WP_011098431.1 mechanosensitive ion channel family protein -
  CTC_RS00350 - 65179..65379 (+) 201 WP_035110697.1 DUF951 domain-containing protein -
  CTC_RS00355 rpsF 65477..65761 (+) 285 WP_023436913.1 30S ribosomal protein S6 -
  CTC_RS00360 (CTC00108) ssb 65777..66214 (+) 438 WP_011098432.1 single-stranded DNA-binding protein Machinery gene
  CTC_RS00365 rpsR 66235..66501 (+) 267 WP_023436916.1 30S ribosomal protein S18 -
  CTC_RS00370 (CTC00109) - 66688..67005 (+) 318 WP_011098433.1 MazG-like family protein -
  CTC_RS00375 (CTC00110) - 67019..68008 (+) 990 WP_011098434.1 YybS family protein -
  CTC_RS00380 (CTC00111) - 68021..70015 (+) 1995 WP_011098435.1 DHH family phosphoesterase -
  CTC_RS00385 (CTC00112) rplI 70012..70455 (+) 444 WP_011098436.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16180.96 Da        Isoelectric Point: 4.6708

>NTDB_id=22664 CTC_RS00360 WP_011098432.1 65777..66214(+) (ssb) [Clostridium tetani E88]
MNRVVLIGRLTKDPELKFTPGTGTAVTTFVLAVDRRFSKDGKNEADFIPVVVWGKQAESTANYMSKGKLIGISGRIQTRS
YEAKDGTRRYVTEVVADEVKFLEWGNKQSSGSQGFNNFESDPLSYNNEDNYNDDITPVDEGEVPF

Nucleotide


Download         Length: 438 bp        

>NTDB_id=22664 CTC_RS00360 WP_011098432.1 65777..66214(+) (ssb) [Clostridium tetani E88]
ATGAATCGTGTAGTCTTAATTGGAAGGCTTACAAAAGATCCTGAATTAAAGTTTACTCCGGGAACAGGAACAGCTGTAAC
TACTTTTGTTTTAGCTGTAGATAGAAGGTTTTCCAAAGATGGAAAAAATGAAGCTGACTTTATCCCTGTAGTAGTATGGG
GAAAACAGGCAGAATCAACAGCTAATTATATGAGTAAGGGTAAACTTATTGGAATTAGTGGAAGAATTCAAACTAGAAGT
TATGAGGCTAAAGATGGCACTAGAAGATATGTTACAGAAGTTGTAGCAGATGAGGTTAAATTCCTAGAATGGGGAAATAA
ACAGTCATCAGGTTCTCAAGGCTTTAATAATTTTGAATCAGATCCACTAAGTTATAATAATGAAGATAATTACAATGATG
ATATAACTCCTGTGGACGAAGGAGAAGTTCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Q0VB51

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

42.262

100

0.49
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.265

80.69

0.462
  ssbB Streptococcus sobrinus strain NIDR 6715-7

42.857

100

0.434
  ssbA Streptococcus mutans UA159

41.379

100

0.414
  ssbB/cilA Streptococcus mitis NCTC 12261

38.095

100

0.386
  ssbB/cilA Streptococcus pneumoniae TIGR4

37.415

100

0.379
  ssbB Bacillus subtilis subsp. subtilis str. 168

53.398

71.034

0.379
  ssbB/cilA Streptococcus pneumoniae Rx1

36.735

100

0.372
  ssbB/cilA Streptococcus pneumoniae D39

36.735

100

0.372
  ssbB/cilA Streptococcus pneumoniae R6

36.735

100

0.372
  ssbB/cilA Streptococcus mitis SK321

36.735

100

0.372

Multiple sequence alignment