Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   PD_RS08910 Genome accession   NC_004556
Coordinates   1970336..1971394 (-) Length   352 a.a.
NCBI ID   WP_004089911.1    Uniprot ID   -
Organism   Xylella fastidiosa Temecula1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1965336..1976394
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PD_RS08890 (PD1691) - 1966569..1968479 (-) 1911 WP_011098213.1 type IV pilus secretin PilQ -
  PD_RS08895 (PD1692) - 1968479..1969009 (-) 531 WP_011098214.1 pilus assembly protein PilP -
  PD_RS08900 (PD1693) - 1969006..1969674 (-) 669 WP_004089909.1 type 4a pilus biogenesis protein PilO -
  PD_RS08905 (PD1694) - 1969776..1970336 (-) 561 Protein_1756 PilN domain-containing protein -
  PD_RS08910 (PD1695) pilM 1970336..1971394 (-) 1059 WP_004089911.1 type IV pilus biogenesis protein PilM Machinery gene
  PD_RS08915 (PD1696) - 1971634..1974063 (+) 2430 WP_012382725.1 penicillin-binding protein 1A -
  PD_RS08920 (PD1697) - 1974367..1975332 (-) 966 WP_004089914.1 aldo/keto reductase -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37539.19 Da        Isoelectric Point: 4.6541

>NTDB_id=22658 PD_RS08910 WP_004089911.1 1970336..1971394(-) (pilM) [Xylella fastidiosa Temecula1]
MGLFSKKQSVLVGVDISSTAVKLLQLSRSGNRFKVEHYAVEPLPLNAVAEKGIVEVEQVGEAIRRAVSRSGTKAKFAAAA
VAGSAVITKLIPMPAGLDEQDLEAQIEIEATNYIPYPIEEVSLDFEVLGPVPNNTEMVQVLLAASRSENVELRQSALELG
GLTAKVIDVEALAVENAFSLIAQELSVGSNALVALIDIGATMSTLNVLHSGRSLYAREQLFGGKQLTDEVMHRYGMTYEE
AGQAKRQGGLPQSYEVEVLGPFKDSVIQQISRLLQFFYAGSEYNRVDCIVLAGGCAVIAGLPAMVEERLGVVTVVANPLA
QMTLGAKVQAHTLAQDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=22658 PD_RS08910 WP_004089911.1 1970336..1971394(-) (pilM) [Xylella fastidiosa Temecula1]
GTGGGGCTTTTTTCAAAAAAACAGTCGGTATTGGTTGGTGTCGACATTAGTTCAACTGCAGTGAAGCTCTTACAGCTTTC
CCGCAGTGGTAATCGCTTCAAGGTGGAACACTATGCTGTGGAGCCGCTACCTCTGAATGCGGTCGCTGAGAAGGGCATCG
TTGAAGTCGAGCAGGTTGGTGAAGCAATCCGTCGTGCGGTAAGTCGTTCTGGAACTAAGGCCAAATTTGCCGCTGCCGCG
GTTGCCGGTTCGGCAGTGATCACCAAATTGATACCGATGCCTGCTGGTCTGGACGAGCAGGATTTGGAAGCTCAGATAGA
AATCGAGGCTACGAATTACATCCCGTACCCTATTGAAGAGGTCAGCCTAGATTTCGAGGTGCTTGGTCCGGTTCCCAACA
ACACGGAGATGGTCCAAGTTTTGCTGGCTGCGTCTCGTTCGGAGAATGTCGAATTGCGCCAATCTGCGTTGGAGCTGGGG
GGGTTGACTGCCAAGGTTATTGACGTGGAAGCTTTAGCGGTTGAGAACGCTTTCTCTCTTATTGCCCAAGAACTGTCGGT
TGGGAGTAATGCATTGGTTGCATTGATCGACATCGGTGCAACGATGTCGACGCTTAATGTGCTGCATAGTGGTCGCAGTT
TGTACGCGCGCGAGCAGCTATTTGGTGGTAAGCAGCTTACTGACGAAGTAATGCATCGCTATGGGATGACTTACGAGGAG
GCTGGTCAGGCCAAGCGTCAAGGAGGTTTGCCGCAAAGCTATGAGGTTGAAGTGCTGGGACCATTTAAGGACTCTGTGAT
CCAGCAGATCAGCCGTTTATTACAGTTTTTCTATGCTGGCAGTGAGTACAACCGAGTTGATTGCATCGTGTTGGCGGGAG
GCTGTGCTGTGATTGCGGGGTTACCGGCTATGGTCGAAGAACGGTTGGGTGTCGTTACCGTTGTGGCTAATCCGCTTGCG
CAGATGACTTTAGGGGCGAAAGTGCAAGCACACACGCTTGCTCAAGATGCACCTGCTTTAATGATTGCTACTGGTCTGGC
TTTGAGGAGTTTTGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

48.864

100

0.489
  comM Acinetobacter nosocomialis M2

48.864

100

0.489
  comM Acinetobacter baylyi ADP1

48.011

100

0.48
  pilM Legionella pneumophila strain ERS1305867

45.609

100

0.457

Multiple sequence alignment