Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   PD_RS04400 Genome accession   NC_004556
Coordinates   1047573..1047989 (+) Length   138 a.a.
NCBI ID   WP_004085459.1    Uniprot ID   A0A060H0R7
Organism   Xylella fastidiosa Temecula1     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 1042573..1052989
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PD_RS04385 (PD0842) - 1044372..1045181 (-) 810 WP_011097814.1 DUF6216 family protein -
  PD_RS04390 (PD0843) - 1045496..1046371 (-) 876 WP_012382557.1 energy transducer TonB family protein -
  PD_RS04395 (PD0844) gshB 1046373..1047317 (-) 945 WP_004572847.1 glutathione synthase -
  PD_RS04400 (PD0845) pilG 1047573..1047989 (+) 417 WP_004085459.1 response regulator Regulator
  PD_RS04405 (PD0846) - 1048006..1048536 (+) 531 WP_004085458.1 chemotaxis protein CheW -
  PD_RS04410 (PD0847) - 1048576..1050618 (+) 2043 WP_004572848.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 138 a.a.        Molecular weight: 15325.02 Da        Isoelectric Point: 9.7976

>NTDB_id=22652 PD_RS04400 WP_004085459.1 1047573..1047989(+) (pilG) [Xylella fastidiosa Temecula1]
MIKSVASGKELAGLRVMVIDDSKTIRRTAETLLKREGCEVVTAIDGFEALAKIADQKSQIIFVDIMMPRLDGYQTCALIK
NNNLFKSTPVIMLSSKDGLFDKARGRVVGSEQYLTKPFTREELLSAIRTYVNPLKLAV

Nucleotide


Download         Length: 417 bp        

>NTDB_id=22652 PD_RS04400 WP_004085459.1 1047573..1047989(+) (pilG) [Xylella fastidiosa Temecula1]
ATGATTAAAAGTGTTGCTAGCGGCAAGGAACTCGCAGGTCTTAGGGTGATGGTCATTGATGACTCAAAAACCATAAGACG
TACCGCTGAAACGCTTCTTAAGCGTGAAGGGTGTGAGGTGGTTACCGCTATTGATGGCTTTGAAGCCTTAGCGAAAATTG
CTGATCAGAAGTCGCAGATTATTTTTGTCGATATTATGATGCCGCGCTTGGATGGTTATCAAACTTGCGCGTTGATAAAA
AACAATAACTTGTTTAAGTCGACTCCAGTGATCATGCTTTCTTCTAAAGATGGCTTATTCGATAAGGCGCGCGGTCGTGT
GGTTGGTTCCGAACAATATCTGACCAAACCTTTTACACGCGAGGAGTTGTTAAGTGCCATCCGTACATATGTTAATCCTT
TAAAATTAGCTGTTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(16-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A060H0R7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

73.77

88.406

0.652

Multiple sequence alignment