Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   ABY78_RS07310 Genome accession   NZ_CP020833
Coordinates   1424317..1426008 (+) Length   563 a.a.
NCBI ID   WP_085401043.1    Uniprot ID   -
Organism   Listeria monocytogenes strain CFSAN004330     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1419317..1431008
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABY78_RS07280 (ABY78_07280) - 1419327..1419554 (+) 228 WP_003722489.1 exodeoxyribonuclease VII small subunit -
  ABY78_RS07285 (ABY78_07285) - 1419557..1420438 (+) 882 WP_003722490.1 polyprenyl synthetase family protein -
  ABY78_RS07290 (ABY78_07290) - 1420637..1420837 (+) 201 WP_003719639.1 cold-shock protein -
  ABY78_RS07295 (ABY78_07295) dxs 1421004..1422833 (+) 1830 WP_085400428.1 1-deoxy-D-xylulose-5-phosphate synthase -
  ABY78_RS07300 (ABY78_07300) - 1422830..1423654 (+) 825 WP_003722492.1 TlyA family RNA methyltransferase -
  ABY78_RS07305 (ABY78_07305) argR 1423845..1424294 (+) 450 WP_003722493.1 transcriptional regulator ArgR -
  ABY78_RS07310 (ABY78_07310) recN 1424317..1426008 (+) 1692 WP_085401043.1 DNA repair protein RecN Machinery gene
  ABY78_RS07315 (ABY78_07315) - 1426137..1427003 (+) 867 WP_003732271.1 phosphate acyltransferase -
  ABY78_RS07320 (ABY78_07320) buk 1427140..1428207 (+) 1068 WP_003722496.1 butyrate kinase -
  ABY78_RS07325 (ABY78_07325) lpdA 1428222..1429649 (+) 1428 WP_014600811.1 dihydrolipoyl dehydrogenase -
  ABY78_RS07330 (ABY78_07330) - 1429674..1430669 (+) 996 WP_003738888.1 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha -

Sequence

Protein


Download         Length: 563 a.a.        Molecular weight: 63392.28 Da        Isoelectric Point: 5.2675

>NTDB_id=226387 ABY78_RS07310 WP_085401043.1 1424317..1426008(+) (recN) [Listeria monocytogenes strain CFSAN004330]
MLQEMTIKNFAIIESLSLTFQEGMTVLTGETGAGKSIIIDALGLLVGGRGSADFIRHGEERLELQGLFALAEGNLACRNA
LIENGIDASDDMVVLERSLFRSGKNSCRINGKLVTTVLLRQIGSKLIDIHSQHEHQELMNEEFHLSLLDRFASDKIKPAL
TKYQTNFKEYQTIEKEWQNWTKNERELAQRLDMLRFQQQEIENANLQAGEEDRLLEQKNILANFEKLNENLQGAYAAIQG
EPGGLEFVGEAMRQMETAASIHTDYKAVSEAISSSYYMLEDSMSQIRQSLDQLEFQPEELNQIESRLNDLNQLKRKYGKT
IEDIIQYEQEISSEMEKLTDSESHVGHLETKLATLKTELTKQAATLTDIRKKAAVTLEKQIKQELNQLYMEKAIFSVRFE
ANKMELTELGQDSVVFYMSTNPGEPLKPLAKIASGGELSRMMLALKTIFSRHQGITSIIFDEVDTGVSGRVGQAIAEKIY
AVSVGSQVLCISHLPQVAAMANHHYYITKKVQNKRTTTSVTVLKGVEKVEEISRMIAGIEVTELTKQHAKEMIEQAGKVK
QTY

Nucleotide


Download         Length: 1692 bp        

>NTDB_id=226387 ABY78_RS07310 WP_085401043.1 1424317..1426008(+) (recN) [Listeria monocytogenes strain CFSAN004330]
TTGCTTCAAGAAATGACAATTAAAAACTTTGCTATCATCGAATCGCTTTCTTTAACTTTTCAAGAAGGGATGACGGTACT
TACGGGGGAGACCGGCGCTGGTAAATCAATTATTATTGATGCGCTTGGTCTTCTTGTTGGCGGACGCGGATCAGCTGATT
TTATCCGTCACGGAGAGGAACGTTTAGAGCTTCAAGGGCTTTTTGCGCTAGCAGAGGGTAACCTAGCTTGCCGAAATGCT
TTAATAGAAAATGGTATAGATGCTTCGGATGATATGGTTGTACTAGAACGCAGTCTGTTTCGCTCGGGAAAAAATAGTTG
CCGAATCAATGGCAAGCTTGTAACTACTGTTCTCTTGCGCCAAATTGGCTCGAAATTAATAGATATCCATAGTCAGCATG
AACATCAGGAATTGATGAATGAGGAGTTTCATTTATCATTACTTGATCGATTCGCTTCTGACAAAATCAAGCCAGCACTA
ACCAAGTACCAAACTAATTTCAAAGAATATCAAACAATTGAGAAAGAATGGCAAAATTGGACAAAAAATGAGCGAGAATT
AGCACAACGTCTTGATATGCTCCGTTTTCAACAACAGGAAATTGAAAATGCCAATTTGCAAGCTGGTGAAGAAGATCGCT
TGTTAGAACAAAAAAATATCTTAGCCAATTTTGAAAAACTTAACGAAAATTTACAAGGAGCTTATGCCGCGATTCAAGGG
GAGCCTGGTGGGCTGGAATTCGTTGGGGAAGCGATGCGTCAAATGGAGACAGCGGCGAGTATTCATACGGATTATAAAGC
AGTTAGTGAAGCAATTTCTTCTAGCTACTATATGTTAGAAGATAGCATGAGCCAAATCAGACAGTCACTTGATCAGCTCG
AATTCCAACCAGAAGAACTTAATCAAATTGAATCGCGTTTAAATGATTTAAACCAATTGAAACGCAAATATGGTAAAACA
ATTGAAGATATCATCCAGTATGAGCAAGAAATAAGTAGCGAAATGGAAAAACTAACGGATAGTGAATCGCATGTGGGTCA
TTTAGAGACAAAATTAGCCACACTCAAAACAGAACTAACAAAACAAGCAGCTACGCTCACTGATATCCGTAAAAAAGCAG
CTGTCACATTAGAAAAACAAATTAAACAAGAATTAAATCAACTTTATATGGAGAAAGCCATTTTTAGTGTGCGTTTTGAA
GCAAACAAAATGGAACTAACAGAATTGGGACAAGATAGCGTCGTCTTTTATATGTCAACAAATCCAGGAGAACCATTAAA
ACCATTAGCAAAAATTGCTTCTGGCGGAGAGTTATCCAGAATGATGTTAGCTTTAAAAACCATTTTCTCTAGACACCAAG
GTATTACATCAATTATTTTCGATGAAGTTGATACCGGAGTAAGTGGACGCGTTGGTCAAGCGATTGCAGAAAAAATTTAT
GCTGTTTCAGTCGGCTCGCAAGTACTATGTATCAGTCATTTGCCTCAAGTAGCAGCAATGGCGAACCACCATTACTACAT
TACAAAAAAAGTCCAAAATAAACGTACAACGACTTCCGTTACAGTGCTTAAAGGAGTAGAAAAAGTAGAAGAAATCAGCC
GAATGATTGCTGGTATAGAAGTCACTGAACTAACAAAACAACATGCAAAAGAAATGATTGAACAAGCGGGAAAAGTAAAA
CAAACGTATTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-513)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

52.604

100

0.538

Multiple sequence alignment