Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   CJE_RS03680 Genome accession   NC_003912
Coordinates   674423..674806 (+) Length   127 a.a.
NCBI ID   WP_002852281.1    Uniprot ID   Q9PHN2
Organism   Campylobacter jejuni RM1221     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 669423..679806
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJE_RS03660 (CJE0734) - 669502..671436 (-) 1935 WP_002867720.1 RNB domain-containing ribonuclease -
  CJE_RS03665 (CJE0735) ilvC 671555..672577 (+) 1023 WP_002852218.1 ketol-acid reductoisomerase -
  CJE_RS03670 (CJE0736) - 672581..673663 (+) 1083 WP_002859983.1 divergent polysaccharide deacetylase family protein -
  CJE_RS03675 (CJE0737) dprA 673653..674426 (+) 774 WP_002867721.1 DNA-processing protein DprA Machinery gene
  CJE_RS03680 (CJE0738) dprB 674423..674806 (+) 384 WP_002852281.1 Holliday junction resolvase RuvX Machinery gene
  CJE_RS03685 (CJE0739) - 674835..675674 (+) 840 WP_011049748.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  CJE_RS03690 (CJE0740) msrA 675850..676347 (-) 498 WP_002852283.1 peptide-methionine (S)-S-oxide reductase MsrA -
  CJE_RS03695 (CJE0741) ppa 676389..676907 (-) 519 WP_002867724.1 inorganic diphosphatase -
  CJE_RS03700 (CJE0742) adk 676917..677495 (-) 579 WP_011049749.1 adenylate kinase -
  CJE_RS03705 (CJE0743) aspS 677492..679243 (-) 1752 WP_011049750.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14088.59 Da        Isoelectric Point: 9.5433

>NTDB_id=22636 CJE_RS03680 WP_002852281.1 674423..674806(+) (dprB) [Campylobacter jejuni RM1221]
MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALGYGVANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=22636 CJE_RS03680 WP_002852281.1 674423..674806(+) (dprB) [Campylobacter jejuni RM1221]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCATAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCTAATGAAATCAAAAATTTACTTAAAATACATGAGATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGTGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGCGGAACAAGCAAAGAAGCTTTAGGATACGGCGTAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCCTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9PHN2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449

Multiple sequence alignment