Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ID18_RS11860 Genome accession   NZ_CP020830
Coordinates   2348115..2348594 (-) Length   159 a.a.
NCBI ID   WP_085380060.1    Uniprot ID   -
Organism   Listeria monocytogenes strain MOD1_LS152     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2343115..2353594
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ID18_RS11820 (ID18_11820) - 2343588..2344919 (-) 1332 WP_070003078.1 PBSX family phage terminase large subunit -
  ID18_RS11825 (ID18_11825) - 2344888..2345430 (-) 543 WP_009912949.1 terminase small subunit -
  ID18_RS11830 (ID18_11830) - 2345470..2345769 (-) 300 WP_031670222.1 hypothetical protein -
  ID18_RS11835 (ID18_11835) - 2346213..2346785 (-) 573 WP_085380058.1 sigma-70 family RNA polymerase sigma factor -
  ID18_RS11840 (ID18_11840) - 2346873..2347028 (-) 156 WP_003744979.1 hypothetical protein -
  ID18_RS14950 - 2347051..2347176 (-) 126 WP_003744976.1 hypothetical protein -
  ID18_RS11845 (ID18_11845) - 2347169..2347552 (-) 384 WP_003744975.1 DUF2481 family protein -
  ID18_RS11850 (ID18_11850) - 2347556..2347960 (-) 405 WP_085380059.1 DUF1064 domain-containing protein -
  ID18_RS11855 (ID18_11855) - 2347905..2348096 (-) 192 WP_003722551.1 hypothetical protein -
  ID18_RS11860 (ID18_11860) ssbA 2348115..2348594 (-) 480 WP_085380060.1 single-stranded DNA-binding protein Machinery gene
  ID18_RS11865 (ID18_11865) - 2348656..2348925 (-) 270 WP_085380061.1 DUF7446 family protein -
  ID18_RS14880 - 2348925..2349101 (-) 177 WP_183081922.1 hypothetical protein -
  ID18_RS11870 (ID18_11870) - 2349098..2349295 (-) 198 WP_232328281.1 hypothetical protein -
  ID18_RS11875 (ID18_11875) - 2349292..2349894 (-) 603 WP_085380062.1 DUF1642 domain-containing protein -
  ID18_RS14915 (ID18_11880) - 2349897..2350295 (-) 399 WP_085380063.1 hypothetical protein -
  ID18_RS11885 (ID18_11885) - 2350292..2350756 (-) 465 WP_014930674.1 class I SAM-dependent methyltransferase -
  ID18_RS11890 (ID18_11890) - 2350753..2351727 (-) 975 WP_068996335.1 phage replisome organizer N-terminal domain-containing protein -
  ID18_RS11895 (ID18_11895) - 2351744..2352403 (-) 660 WP_085380064.1 ERF family protein -
  ID18_RS11900 (ID18_11900) - 2352408..2352884 (-) 477 WP_003747311.1 siphovirus Gp157 family protein -
  ID18_RS11905 (ID18_11905) - 2352881..2353075 (-) 195 WP_009930470.1 hypothetical protein -
  ID18_RS14955 - 2353170..2353298 (-) 129 WP_009930468.1 hypothetical protein -
  ID18_RS11910 (ID18_11910) - 2353377..2353565 (-) 189 WP_003747307.1 gp45 family putative tail fiber system protein -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 17725.56 Da        Isoelectric Point: 5.2868

>NTDB_id=226286 ID18_RS11860 WP_085380060.1 2348115..2348594(-) (ssbA) [Listeria monocytogenes strain MOD1_LS152]
MMNRVVLVGRLTKDPDLRYTPAGAAVATFTLAVNRPFKNAQGEQEADFIQCVVWRKPAENVANFLKKGSMAGVDGRIQTR
NYEDNDGKRVFVTEVVAESVQFLEPRNHAEGATSNNYQNQANYSNNNKTSSYRADTSQKSDSFANEGKPIDINEDDLPF

Nucleotide


Download         Length: 480 bp        

>NTDB_id=226286 ID18_RS11860 WP_085380060.1 2348115..2348594(-) (ssbA) [Listeria monocytogenes strain MOD1_LS152]
ATGATGAACCGTGTAGTACTTGTAGGACGATTAACAAAAGACCCAGATTTACGTTACACTCCAGCAGGCGCGGCTGTTGC
GACTTTTACATTAGCAGTAAATCGCCCATTTAAAAATGCACAAGGAGAACAAGAAGCCGATTTTATTCAATGCGTTGTTT
GGCGTAAACCAGCAGAAAACGTTGCTAATTTCTTGAAGAAAGGAAGTATGGCAGGCGTTGATGGTCGAATTCAAACGCGC
AATTACGAAGATAACGACGGTAAACGAGTTTTTGTTACAGAAGTAGTTGCTGAGTCAGTTCAATTCTTAGAGCCCAGAAA
CCACGCAGAAGGCGCTACATCAAATAATTATCAAAACCAAGCTAATTATTCAAATAACAATAAAACAAGCTCATATAGAG
CGGATACGAGCCAGAAGAGCGATTCATTTGCAAATGAAGGTAAGCCGATTGATATTAACGAAGACGATTTGCCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

62.791

100

0.679
  ssb Latilactobacillus sakei subsp. sakei 23K

55.882

100

0.597
  ssbB Bacillus subtilis subsp. subtilis str. 168

62.5

70.44

0.44

Multiple sequence alignment