Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ECA_RS02355 Genome accession   NC_004547
Coordinates   528905..530287 (-) Length   460 a.a.
NCBI ID   WP_011092086.1    Uniprot ID   Q6D9Z9
Organism   Pectobacterium atrosepticum SCRI1043     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 523905..535287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECA_RS02330 (ECA0459) pepP 524040..525365 (-) 1326 WP_011092081.1 Xaa-Pro aminopeptidase -
  ECA_RS02335 (ECA0460) - 525471..526058 (-) 588 WP_011092082.1 YecA family protein -
  ECA_RS02340 (ECA0461) zapA 526251..526580 (+) 330 WP_011092083.1 cell division protein ZapA -
  ECA_RS02345 (ECA0462) - 526879..527520 (+) 642 WP_039296849.1 5-formyltetrahydrofolate cyclo-ligase -
  ECA_RS02350 (ECA0463) nadR 527517..528770 (-) 1254 WP_011092085.1 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR -
  ECA_RS02355 (ECA0464) radA 528905..530287 (-) 1383 WP_011092086.1 DNA repair protein RadA Machinery gene
  ECA_RS02360 (ECA0465) serB 530305..531282 (-) 978 WP_011092087.1 phosphoserine phosphatase -
  ECA_RS02365 (ECA0466) - 531439..532134 (+) 696 WP_011092088.1 YtjB family periplasmic protein -
  ECA_RS02370 (ECA0467) - 532188..533090 (-) 903 WP_011092089.1 hypothetical protein -
  ECA_RS02375 (ECA0468) prfC 533382..534971 (+) 1590 WP_011092090.1 peptide chain release factor 3 -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49585.23 Da        Isoelectric Point: 7.4463

>NTDB_id=22615 ECA_RS02355 WP_011092086.1 528905..530287(-) (radA) [Pectobacterium atrosepticum SCRI1043]
MAKAIKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLASASVSRSDRLTGYAGESAGVSRVQKLSEISLEALPRFSTG
FLEFDRVLGGGVVPGSAILIGGSPGAGKSTLLLQTLCKLSEHMKTLYVTGEESLQQVAMRAHRLNLPTQNLNMLSETSIE
QICLIAEQEQPKLMVIDSIQVMHLADIQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS
VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREISNPSAIFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDQ
SMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMSDQDVFVNVVGGVKVTETSADLALLLSLVSSFRDRPLPQDLVIFGEV
GLAGEIRPVPSGQERITEAAKHGFKRAIIPHANMPKKAPASMQVFGVKKLADALAILDDL

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=22615 ECA_RS02355 WP_011092086.1 528905..530287(-) (radA) [Pectobacterium atrosepticum SCRI1043]
GTGGCAAAAGCCATCAAACGGGCGTTTGTATGTAATGAATGCGGAGCTGACTATCCGCGCTGGCAAGGGCAGTGTAGTGC
GTGCCACGCCTGGAACACCATTACCGAAGTTCGCCTGGCGTCGGCGTCCGTATCACGCTCCGACCGTCTCACTGGCTATG
CGGGTGAGAGCGCGGGCGTTAGCCGGGTGCAAAAGCTCTCAGAAATCAGCCTTGAAGCGCTACCTCGCTTTTCCACTGGC
TTTCTGGAGTTTGATCGCGTTCTGGGCGGCGGCGTCGTTCCAGGCAGCGCCATTCTAATCGGCGGTAGCCCTGGCGCGGG
TAAGAGTACGCTGCTACTGCAAACACTCTGCAAGCTGTCAGAACATATGAAAACCCTGTACGTCACTGGGGAAGAATCAT
TGCAGCAGGTGGCGATGCGAGCGCACCGCCTCAATCTGCCGACTCAGAATCTCAACATGCTGTCTGAAACCAGCATCGAA
CAGATTTGCCTGATTGCCGAGCAAGAACAGCCGAAGTTGATGGTGATCGACTCCATTCAGGTCATGCATCTCGCCGACAT
TCAATCGTCTCCCGGCAGCGTGGCGCAAGTGCGTGAAACTGCCGCCTACCTGACGCGCTTCGCTAAAACGCGCGGCGTCG
CCATTGTGATGGTCGGCCACGTCACCAAAGACGGCTCACTCGCCGGGCCGAAAGTATTGGAACACTGTATCGACTGTTCC
GTACTGCTGGACGGCGATGCAGATTCGCGCTTTCGCACGCTGCGCAGCCATAAAAACCGTTTCGGTGCCGTTAACGAGCT
CGGCGTGTTCGCCATGACGGAACAAGGGCTGCGAGAGATCAGCAATCCATCAGCCATTTTCCTCAGCCGTGGTGACGAAG
TGACATCTGGCAGTTCAGTCATGGTGGTATGGGAAGGTACGCGTCCGCTGCTGGTCGAGATTCAGGCGCTGGTAGATCAA
TCGATGATGGCCAACCCGCGTCGCGTTGCGGTCGGGCTGGAGCAAAACCGATTAGCGATTCTGCTGGCGGTACTGCATCG
CCACGGTGGCTTACAAATGTCGGATCAGGATGTGTTCGTGAATGTCGTCGGTGGCGTCAAAGTGACCGAAACCAGCGCCG
ATCTTGCACTTCTGCTATCACTGGTTTCCAGCTTCCGCGATCGCCCGCTGCCACAGGATCTGGTCATCTTCGGTGAAGTC
GGTCTGGCAGGCGAAATTCGTCCAGTTCCCAGCGGCCAAGAGCGGATTACCGAAGCCGCCAAGCACGGCTTCAAACGCGC
CATCATTCCTCATGCCAATATGCCGAAGAAAGCTCCAGCCAGTATGCAGGTATTCGGCGTGAAAAAACTGGCCGACGCGC
TGGCGATCCTCGACGATCTCTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(348-433)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(89-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q6D9Z9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.478

100

0.485
  radA Streptococcus pneumoniae Rx1

42.763

99.13

0.424
  radA Streptococcus pneumoniae D39

42.763

99.13

0.424
  radA Streptococcus pneumoniae R6

42.763

99.13

0.424
  radA Streptococcus pneumoniae TIGR4

42.763

99.13

0.424
  radA Streptococcus mitis NCTC 12261

42.763

99.13

0.424
  radA Streptococcus mitis SK321

42.763

99.13

0.424

Multiple sequence alignment