Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   B9G73_RS24850 Genome accession   NZ_CP020818
Coordinates   5232739..5234178 (-) Length   479 a.a.
NCBI ID   WP_110129135.1    Uniprot ID   -
Organism   Bordetella bronchiseptica strain F709     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5227739..5239178
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9G73_RS24825 (B9G73_24790) - 5228821..5229504 (+) 684 WP_003815897.1 hypothetical protein -
  B9G73_RS24830 (B9G73_24795) bfr 5229586..5230062 (-) 477 WP_003815898.1 bacterioferritin -
  B9G73_RS24835 (B9G73_24800) - 5230401..5231330 (-) 930 WP_015042041.1 DMT family transporter -
  B9G73_RS24840 (B9G73_24805) - 5231438..5232316 (+) 879 WP_110129134.1 LysR substrate-binding domain-containing protein -
  B9G73_RS24845 (B9G73_24810) - 5232344..5232646 (-) 303 WP_003815905.1 (2Fe-2S)-binding protein -
  B9G73_RS24850 (B9G73_24815) rpoN/rpoN1 5232739..5234178 (-) 1440 WP_110129135.1 RNA polymerase factor sigma-54 Machinery gene
  B9G73_RS24855 (B9G73_24820) - 5234177..5234824 (+) 648 WP_003815907.1 hypothetical protein -
  B9G73_RS24860 (B9G73_24825) leuA 5235251..5236957 (+) 1707 WP_003818182.1 2-isopropylmalate synthase -
  B9G73_RS24865 (B9G73_24830) - 5237009..5238292 (-) 1284 WP_110129136.1 amidase -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 52380.54 Da        Isoelectric Point: 4.7700

>NTDB_id=226100 B9G73_RS24850 WP_110129135.1 5232739..5234178(-) (rpoN/rpoN1) [Bordetella bronchiseptica strain F709]
MQNIVPMTRPALELRPGQHLTLTPQLQQSIRLLQLSSLELEAELSQALAENPLLERDEDPEREEQADPEREASVEADEAP
DTELRLDEMPGSGGVHPDDDSDLPQAARPDTLREHLLGQLALTRAAPRDVALCGLLIDELDENGYLDSPLEEILTWLPAE
AQADLDELRAALALLQSFDPAGIGARDMAECLQLQLRQPDPARLPEAADAEVLACARRICAQHLPLLATGNVARVREAVQ
CDEAVVRAAHALILRLEPRPGRAWTVPAADYAIPDVIVRRTRQGWQAVLNSAVVPRLHVNAVYAQVLGGQRQGGNAGLQA
QLQQARWMIRNVEQRFDTILRVAQAIVAHQQAFFSQGPAAMRPLILKDIAGELDLHESTISRATTQKYMLTPFGTLELKR
FFGAGVATDGGDATSATAVQAVIRQLVADEDRGKPLSDSQIMQRLADQGIVIARRTVAKYREALRIAPATLRKAQAAGR

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=226100 B9G73_RS24850 WP_110129135.1 5232739..5234178(-) (rpoN/rpoN1) [Bordetella bronchiseptica strain F709]
ATGCAAAATATTGTACCTATGACTCGTCCCGCGCTAGAACTTCGTCCTGGTCAACATTTGACGTTGACCCCTCAACTGCA
ACAGTCGATCCGGCTGTTGCAGCTGTCGTCGCTGGAGCTGGAGGCCGAACTGTCGCAGGCGCTGGCCGAGAATCCGTTGC
TGGAACGCGACGAAGATCCGGAGCGCGAGGAGCAGGCCGACCCCGAGCGCGAGGCCTCGGTCGAGGCCGACGAGGCGCCG
GATACCGAACTGCGCCTGGACGAGATGCCCGGTTCGGGCGGCGTCCATCCCGACGACGACAGCGACCTGCCGCAGGCGGC
GCGCCCGGACACCCTGCGCGAGCATCTGCTGGGGCAGCTGGCGCTGACGCGCGCCGCCCCGCGCGATGTGGCGCTGTGCG
GTCTGCTGATCGACGAACTGGACGAGAACGGCTACCTGGATTCGCCCCTGGAAGAGATCCTGACATGGCTGCCGGCCGAG
GCGCAGGCCGACCTGGACGAGCTGCGCGCGGCGCTCGCATTGCTGCAGTCGTTCGATCCGGCAGGCATCGGCGCGCGCGA
CATGGCCGAATGCCTGCAGCTGCAGTTGCGCCAGCCCGATCCGGCGCGCCTGCCCGAGGCGGCCGATGCCGAGGTGCTGG
CCTGTGCGCGGCGCATCTGTGCGCAGCATCTGCCCTTGCTGGCCACCGGCAACGTGGCCCGCGTGCGCGAGGCCGTGCAA
TGCGACGAGGCGGTCGTGCGCGCCGCGCACGCGCTGATCCTGCGCCTGGAGCCCCGGCCGGGCCGTGCCTGGACGGTGCC
GGCGGCCGATTACGCCATTCCCGACGTGATCGTGCGCCGCACCCGCCAGGGCTGGCAGGCGGTGCTCAACAGCGCTGTCG
TGCCGCGGCTGCACGTCAATGCCGTCTATGCGCAAGTGCTGGGCGGCCAGCGCCAGGGCGGCAACGCCGGCCTGCAGGCG
CAGCTGCAGCAGGCGCGCTGGATGATCCGCAACGTGGAGCAGCGCTTCGACACCATCCTGCGCGTGGCGCAGGCGATCGT
GGCGCATCAGCAGGCGTTCTTCAGCCAGGGGCCGGCGGCCATGCGGCCGTTGATCCTCAAGGACATCGCCGGCGAACTGG
ATCTGCACGAATCGACCATTTCACGGGCGACGACGCAGAAGTACATGCTCACACCGTTCGGCACGCTGGAGCTCAAGCGC
TTCTTCGGCGCGGGCGTGGCCACCGACGGCGGCGACGCCACCTCGGCCACCGCGGTGCAGGCGGTGATCCGCCAGCTGGT
GGCCGACGAGGATCGCGGCAAGCCCTTGTCGGACAGCCAGATCATGCAGCGCCTGGCCGACCAGGGCATCGTCATCGCTC
GCCGCACGGTGGCCAAGTACCGCGAGGCGCTGCGTATCGCGCCCGCGACGCTACGCAAGGCCCAGGCGGCGGGTCGTTAG

Domains

Predicted by InterProScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(106-303)

Sigma-54, DNA binding domain (Sigma54_DBD)

(318-473)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(12-55)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

48.221

100

0.509

Multiple sequence alignment