Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   BkAM31D_RS15445 Genome accession   NZ_CP020814
Coordinates   3074817..3076541 (-) Length   574 a.a.
NCBI ID   WP_066159130.1    Uniprot ID   -
Organism   Halalkalibacter krulwichiae strain AM31D     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3069817..3081541
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BkAM31D_RS15425 (BkAM31D_16820) - 3070367..3071032 (-) 666 WP_066159143.1 glycosyltransferase family 2 protein -
  BkAM31D_RS15430 (BkAM31D_16825) steA 3071025..3072164 (-) 1140 WP_066159140.1 putative cytokinetic ring protein SteA -
  BkAM31D_RS15435 (BkAM31D_16830) spo0A 3072360..3073160 (-) 801 WP_066159136.1 sporulation transcription factor Spo0A -
  BkAM31D_RS15440 (BkAM31D_16835) spoIVB 3073404..3074693 (-) 1290 WP_066159133.1 SpoIVB peptidase -
  BkAM31D_RS15445 (BkAM31D_16840) recN 3074817..3076541 (-) 1725 WP_066159130.1 DNA repair protein RecN Machinery gene
  BkAM31D_RS15450 (BkAM31D_16845) ahrC 3076556..3077005 (-) 450 WP_066159127.1 transcriptional regulator AhrC/ArgR -
  BkAM31D_RS15455 (BkAM31D_16850) - 3077196..3078029 (-) 834 WP_066159126.1 TlyA family RNA methyltransferase -
  BkAM31D_RS15460 (BkAM31D_16855) dxs 3078034..3079923 (-) 1890 WP_066159123.1 1-deoxy-D-xylulose-5-phosphate synthase -
  BkAM31D_RS15465 (BkAM31D_16860) - 3079934..3080542 (-) 609 WP_066159121.1 hypothetical protein -

Sequence

Protein


Download         Length: 574 a.a.        Molecular weight: 64532.35 Da        Isoelectric Point: 4.8930

>NTDB_id=226015 BkAM31D_RS15445 WP_066159130.1 3074817..3076541(-) (recN) [Halalkalibacter krulwichiae strain AM31D]
MLLELSIRHFAIIDELTIQFEKGLTVLTGETGAGKSIIIDAIGLLLGGRGSSEFVRHGEKRAEIEGLFVVDDQHPVISKA
LEYGIDVQDSMFILRRNITSQGKSICRVNGKLVTLAILREIGQVLVDIHGQHEHQALMQADQHISMLDGFAQKELSKELM
EYQSLYKEARQLQKQLASLSRNEQEMAQKLDLFQYQLKEIEQANLQPNEDKVLGEERHKLAHSEKLFGLLQDSYSGLYGE
GRGLDFLSTAVAHLEEAVSIDQQLSSLYESVSNSYYLLEEAAFTLRDQIEQIEFDPNRLEFIESRLHEIQKLKRKYGDTV
DDVLEHAARVEEELDSIIHKDDRISKLQLELDGLWQDLLVEAKGLTQIRKQAALKLTESIHEQLRSLYMEKTTFDVRLNE
KSPTKHSPTIEGREVSFGPDGIDEVEFYLSTNPGEPMKPLSKVASGGEISRIMLALKSIFSNQQGVTSVIFDEVDTGVSG
RVAQAIAEKIHGISLGSQVLCITHLPQVAAMADSHLYIQKREENERVRTTVKSLTSDEKVAEIARMISGVEVTELTLQHA
KELLELADQLKQPA

Nucleotide


Download         Length: 1725 bp        

>NTDB_id=226015 BkAM31D_RS15445 WP_066159130.1 3074817..3076541(-) (recN) [Halalkalibacter krulwichiae strain AM31D]
ATGTTGCTTGAATTATCAATTAGGCATTTCGCGATTATTGATGAACTAACAATCCAATTTGAAAAGGGTTTGACCGTGTT
AACCGGTGAGACGGGAGCGGGAAAGTCGATAATAATTGATGCAATTGGTTTGCTTCTAGGTGGCCGTGGGTCATCTGAAT
TTGTAAGACACGGCGAAAAGCGAGCCGAAATTGAAGGACTGTTTGTTGTAGATGATCAGCATCCTGTAATCTCTAAAGCG
CTAGAATATGGCATAGATGTACAAGATTCCATGTTTATTTTACGAAGAAATATTACTTCACAAGGGAAAAGCATTTGCAG
AGTTAATGGTAAGTTAGTGACATTGGCTATACTAAGGGAAATTGGACAAGTTCTTGTTGATATACATGGTCAGCATGAGC
ACCAGGCTCTTATGCAGGCTGATCAACACATTTCGATGCTAGATGGTTTTGCGCAAAAAGAGCTATCTAAAGAGTTAATG
GAATATCAAAGCTTGTATAAAGAAGCGAGACAATTACAGAAGCAATTAGCTAGTTTGAGCCGAAATGAACAAGAAATGGC
ACAGAAGCTCGATCTGTTTCAATATCAATTAAAAGAAATTGAACAAGCAAATTTGCAACCTAATGAAGATAAGGTACTCG
GGGAAGAAAGACACAAATTGGCTCATAGTGAGAAGTTATTTGGGTTGCTTCAAGATAGTTATTCAGGGCTTTATGGTGAA
GGCAGGGGTCTTGATTTTCTCTCAACTGCTGTTGCACACCTTGAAGAGGCTGTATCAATTGATCAACAACTGAGTAGCTT
ATATGAGTCTGTCAGCAATAGTTATTACTTACTGGAAGAAGCCGCTTTCACGTTAAGAGATCAGATTGAACAAATTGAGT
TTGATCCGAATCGTTTAGAATTTATTGAAAGTAGATTACATGAAATTCAAAAGTTGAAGCGTAAGTATGGGGATACGGTT
GATGATGTGTTAGAACATGCAGCAAGGGTTGAAGAGGAATTAGATTCAATCATTCACAAAGATGATCGAATTTCAAAGCT
TCAACTGGAATTAGATGGACTATGGCAGGATTTACTTGTTGAAGCAAAAGGTCTGACCCAAATAAGGAAGCAGGCAGCTT
TGAAATTAACAGAGTCTATACATGAACAACTCAGATCTTTATATATGGAGAAAACGACCTTTGATGTTCGCTTAAATGAA
AAATCTCCAACGAAGCATTCTCCTACTATTGAAGGGCGGGAGGTGTCGTTTGGACCTGATGGGATTGATGAGGTCGAGTT
CTATTTATCAACCAATCCAGGAGAGCCAATGAAACCATTGTCTAAAGTAGCCTCTGGTGGTGAAATTTCACGTATTATGT
TAGCACTTAAATCGATTTTTTCGAATCAACAAGGTGTGACTTCGGTGATTTTCGATGAAGTTGATACAGGTGTGAGTGGT
CGTGTCGCCCAAGCGATTGCAGAGAAGATACACGGGATTTCGTTAGGTTCACAAGTGCTTTGTATTACGCACTTACCTCA
AGTCGCTGCGATGGCAGATTCTCATTTATATATCCAAAAGAGAGAAGAGAACGAGCGTGTAAGGACAACCGTTAAATCGT
TAACATCTGATGAGAAAGTAGCTGAGATTGCAAGGATGATTTCTGGAGTAGAAGTAACTGAGCTTACCCTGCAACATGCA
AAAGAGTTATTAGAACTTGCGGATCAGTTAAAGCAGCCAGCCTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

58.813

99.826

0.587

Multiple sequence alignment