Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   BkAM31D_RS04475 Genome accession   NZ_CP020814
Coordinates   856284..858605 (+) Length   773 a.a.
NCBI ID   WP_066155683.1    Uniprot ID   -
Organism   Halalkalibacter krulwichiae strain AM31D     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 851284..863605
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BkAM31D_RS04450 (BkAM31D_04845) - 852056..852691 (+) 636 WP_066155699.1 YitT family protein -
  BkAM31D_RS04455 (BkAM31D_04850) cymR 852636..853055 (+) 420 WP_066155697.1 cysteine metabolism transcriptional regulator CymR -
  BkAM31D_RS04460 (BkAM31D_04855) - 853269..854429 (+) 1161 WP_066155695.1 cysteine desulfurase family protein -
  BkAM31D_RS04465 (BkAM31D_04860) mnmA 854450..855552 (+) 1103 Protein_850 tRNA 2-thiouridine(34) synthase MnmA -
  BkAM31D_RS04470 (BkAM31D_04870) - 855618..856271 (+) 654 WP_066155688.1 lipopolysaccharide assembly protein LapB -
  BkAM31D_RS04475 (BkAM31D_04875) recD2 856284..858605 (+) 2322 WP_066155683.1 ATP-dependent RecD-like DNA helicase Machinery gene
  BkAM31D_RS04480 (BkAM31D_04880) - 858634..859107 (+) 474 WP_066155679.1 PRC-barrel domain-containing protein -
  BkAM31D_RS04485 (BkAM31D_04885) - 859124..859330 (+) 207 WP_174521918.1 hypothetical protein -
  BkAM31D_RS04490 (BkAM31D_04890) - 859464..860528 (+) 1065 WP_066155673.1 AI-2E family transporter -
  BkAM31D_RS04495 (BkAM31D_04900) alaS 860832..863471 (+) 2640 WP_066155671.1 alanine--tRNA ligase -

Sequence

Protein


Download         Length: 773 a.a.        Molecular weight: 87325.19 Da        Isoelectric Point: 5.2626

>NTDB_id=226003 BkAM31D_RS04475 WP_066155683.1 856284..858605(+) (recD2) [Halalkalibacter krulwichiae strain AM31D]
MNEESILEEERTIERGFIKGNVNHIVFRNEENFYTVALIRVQQTNEEFKEKTITVVGVLPKLEQDETFLFFGQMIQHPKF
GVQYQVEQFRRDLPQTKHGIIQYLSSGRFPGIGLKTAESIVDVLDERAITRIVEDRSVLSDIPKLSKEKADSLYEQLVDQ
QGVEQVLMMLSKHGFGVELSLKVYQAYGLQAIDIIQTNPYQLIADVEGIGFRKADLLGAAIGITGNHPDRIRAGCLFLIQ
ELCLQEGHVFIDKSSLTPHVISLLSSYEFKVEAHEVEQQIEVMHEDDLIFLEEERVYLKSLYFAEKGIVSSVRRLLSEEI
EEEFPEAEFLKALGKLEEEFNIEYAPSQKQAIQTALSSPLMILTGGPGTGKTTVIKGIVELYARLHGISLDEKAYTKQNP
FPILLVAPTGRAAKRMSEATELPATTIHRLLGWKGGTGGFEKGDHEPLEGDLLIVDESSMVDIWLMNQLLKSVPKGMQVV
LVGDQDQLPSVGPGQVLRDFLDADVIPMVPLVDIYRQAEGSSIIELAHAMKQGKMPENLPNPQKDRRFFPCQMDHVQQVV
SQICENALKKGYTAKDIQVLAPMYKGSAGITELNRMLQQLFNPHSDQRREISFGDVVYRTGDVVLQLVNNPDENVYNGDR
GEIVAIFYAKENQEKQDQVVISFDGIEVIYQKKDLNQITHAYCCSIHKAQGSEFPIVVMPVVRSYARMLRRNLLYTGITR
AKQFLLLCGDLKAIHSAITQKEELHRNSMLQMKLRNLTVEKANQHNLEEKATN

Nucleotide


Download         Length: 2322 bp        

>NTDB_id=226003 BkAM31D_RS04475 WP_066155683.1 856284..858605(+) (recD2) [Halalkalibacter krulwichiae strain AM31D]
GTGAATGAGGAATCGATCTTGGAAGAAGAGAGAACTATTGAACGTGGGTTTATAAAAGGAAACGTTAATCATATTGTATT
TCGTAATGAGGAAAACTTTTATACAGTAGCGCTTATTCGGGTCCAGCAAACGAATGAAGAATTCAAAGAGAAAACAATTA
CGGTAGTTGGAGTTTTACCTAAATTAGAACAAGATGAAACGTTTTTGTTTTTTGGTCAAATGATTCAACATCCTAAGTTT
GGTGTTCAATATCAAGTTGAACAGTTTAGAAGGGATCTGCCACAAACGAAGCATGGAATTATTCAATATTTGTCTAGCGG
CCGTTTTCCTGGTATTGGGTTGAAAACCGCTGAGTCGATTGTTGATGTGTTGGATGAACGAGCTATTACACGGATTGTGG
AGGACCGTTCTGTTTTAAGTGATATTCCAAAGTTATCAAAGGAAAAAGCAGATAGCTTATATGAACAGCTTGTTGATCAG
CAAGGGGTCGAGCAAGTATTGATGATGTTATCGAAGCACGGATTTGGAGTAGAGCTATCATTAAAAGTGTATCAAGCATA
TGGATTACAAGCTATTGATATTATTCAAACAAACCCTTATCAATTAATTGCTGATGTTGAAGGGATTGGTTTTAGAAAAG
CTGATTTATTAGGCGCAGCAATTGGAATAACCGGGAATCACCCGGATCGGATTCGTGCAGGTTGTCTTTTTTTAATACAG
GAACTTTGTCTGCAAGAAGGGCATGTTTTCATTGACAAATCGAGTCTTACCCCACATGTCATATCTCTGCTTTCTTCTTA
CGAATTTAAGGTTGAAGCACACGAAGTTGAACAACAAATTGAAGTGATGCACGAAGATGATCTCATCTTTTTAGAGGAAG
AGAGAGTTTACCTCAAATCATTATATTTTGCTGAAAAAGGGATTGTATCAAGTGTTCGAAGACTACTTAGTGAAGAAATC
GAGGAGGAATTTCCGGAAGCTGAATTTCTAAAAGCATTAGGTAAATTGGAAGAAGAATTCAATATAGAGTACGCACCGTC
GCAAAAGCAAGCGATTCAAACGGCACTTAGTTCACCATTAATGATCTTAACGGGAGGTCCTGGAACAGGAAAGACGACTG
TAATTAAAGGAATTGTTGAGTTATATGCAAGATTACATGGAATTTCATTAGATGAAAAGGCATATACGAAACAAAATCCC
TTTCCGATCTTGCTTGTTGCTCCAACAGGGAGAGCTGCTAAGAGGATGAGTGAAGCAACAGAATTACCCGCTACAACCAT
TCACCGACTACTTGGTTGGAAGGGTGGGACTGGTGGTTTTGAAAAAGGAGATCATGAACCTCTTGAAGGTGATTTACTAA
TTGTTGATGAAAGCTCAATGGTGGATATATGGTTAATGAATCAGCTTTTGAAATCTGTTCCTAAAGGAATGCAGGTCGTA
CTTGTAGGCGATCAGGATCAGCTTCCATCAGTCGGACCTGGACAAGTATTACGTGACTTTTTAGATGCAGATGTTATTCC
GATGGTACCTTTGGTCGATATTTATCGACAAGCAGAAGGGTCTTCTATTATTGAGCTTGCTCATGCGATGAAACAAGGGA
AAATGCCTGAAAATCTGCCCAATCCTCAAAAAGACCGTCGCTTTTTTCCTTGTCAAATGGATCATGTACAACAAGTCGTT
TCACAAATATGTGAAAATGCATTGAAGAAAGGCTATACTGCGAAGGATATTCAAGTATTAGCCCCGATGTATAAAGGTAG
CGCAGGGATTACTGAGTTAAATCGGATGCTCCAACAATTATTTAATCCTCACTCGGATCAACGCCGTGAAATTAGCTTCG
GTGACGTTGTTTATCGAACAGGTGATGTTGTTTTACAATTGGTGAATAATCCAGATGAAAATGTTTATAACGGAGACCGT
GGAGAAATTGTTGCCATTTTTTACGCCAAAGAAAACCAAGAAAAGCAAGATCAGGTCGTGATTTCTTTTGATGGAATTGA
AGTCATCTATCAGAAAAAAGATCTCAATCAAATCACTCATGCCTATTGTTGTTCTATTCATAAAGCACAAGGAAGCGAAT
TTCCAATTGTTGTGATGCCGGTAGTAAGGAGCTATGCGAGAATGCTAAGAAGAAACTTATTATATACAGGGATTACTCGA
GCTAAGCAATTTCTTCTATTATGCGGAGATTTAAAAGCTATACATTCTGCTATCACACAAAAAGAAGAATTGCATAGAAA
TTCAATGCTTCAAATGAAATTACGAAATTTAACAGTGGAAAAAGCTAACCAACATAACTTAGAGGAAAAAGCCACAAACT
AA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(680-728)

AAA domain (AAA_30)

(344-539)

Helix-hairpin-helix containing domain (HHH_RecD2)

(160-250)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(593-663)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

56.107

96.378

0.541

Multiple sequence alignment