Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   BkAM31D_RS03840 Genome accession   NZ_CP020814
Coordinates   729379..730332 (+) Length   317 a.a.
NCBI ID   WP_066156028.1    Uniprot ID   A0A1X9MAB9
Organism   Halalkalibacter krulwichiae strain AM31D     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 724379..735332
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BkAM31D_RS03820 (BkAM31D_04165) - 725104..726021 (+) 918 WP_066156039.1 proline dehydrogenase family protein -
  BkAM31D_RS03825 (BkAM31D_04170) rocF 726116..727021 (+) 906 WP_066156036.1 arginase -
  BkAM31D_RS03830 (BkAM31D_04175) - 727063..728439 (+) 1377 WP_066156034.1 YjiH family protein -
  BkAM31D_RS03835 (BkAM31D_04180) - 728580..729023 (+) 444 WP_066156031.1 MarR family winged helix-turn-helix transcriptional regulator -
  BkAM31D_RS03840 (BkAM31D_04185) ceuB 729379..730332 (+) 954 WP_066156028.1 ABC transporter permease Machinery gene
  BkAM31D_RS03845 (BkAM31D_04190) - 730322..731272 (+) 951 WP_066156025.1 iron chelate uptake ABC transporter family permease subunit -
  BkAM31D_RS03850 (BkAM31D_04195) - 731266..732024 (+) 759 WP_066156022.1 ABC transporter ATP-binding protein -
  BkAM31D_RS03855 (BkAM31D_04200) - 732250..733236 (+) 987 WP_066156019.1 siderophore ABC transporter substrate-binding protein -
  BkAM31D_RS03860 (BkAM31D_04205) nfsA 733429..734169 (+) 741 WP_066156016.1 oxygen-insensitive NADPH nitroreductase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35305.67 Da        Isoelectric Point: 10.1658

>NTDB_id=225997 BkAM31D_RS03840 WP_066156028.1 729379..730332(+) (ceuB) [Halalkalibacter krulwichiae strain AM31D]
MRKRYLVIILILLSIASLFIGVRDISPLDIFRLSEEQIQTLLIVRFPRLISIIIAGVGMSVCGLIMQQLTRNRFVSPTTA
GTLDSARLGILVSLILFTSASPLQKMLVAFAFALIGTFIFMKILERIKFKDTIFIPLVGLMFGNIVSSITTFFAYRFDLI
QNMSAWLQGNFAGIVRGSYELLYISIPVLLIAYFFANRFTVAGMGEEFSVNLGLNYKQVVNIGLIIVALITSVVVLTVGM
IPFLGLIIPNIVTIYKGDNLRENLPYTALLGAIFVLFCDILGRLIIYPYEIAIGLTVGVIGSGIFLYLLLRRKRYGF

Nucleotide


Download         Length: 954 bp        

>NTDB_id=225997 BkAM31D_RS03840 WP_066156028.1 729379..730332(+) (ceuB) [Halalkalibacter krulwichiae strain AM31D]
ATGCGAAAACGTTATCTAGTCATTATTTTGATTCTTTTATCAATTGCTTCTTTGTTCATAGGAGTGAGAGATATATCACC
CTTGGATATTTTTCGGTTAAGCGAAGAGCAAATTCAAACACTTTTGATTGTTCGATTTCCAAGACTTATAAGCATTATTA
TTGCCGGAGTTGGGATGAGTGTCTGTGGTCTAATCATGCAGCAACTGACAAGAAATCGATTTGTTTCTCCAACAACTGCT
GGTACATTAGATTCTGCTAGGCTCGGAATCTTAGTATCTTTGATCCTATTTACTTCTGCTAGCCCCCTTCAAAAAATGCT
TGTTGCTTTTGCTTTTGCATTAATAGGGACGTTTATTTTCATGAAGATATTGGAGCGAATTAAATTCAAAGATACGATTT
TTATTCCGCTTGTTGGTCTTATGTTCGGGAACATTGTTAGCTCAATTACAACTTTTTTCGCCTACCGTTTTGACTTAATT
CAAAACATGTCTGCATGGCTACAAGGAAACTTTGCTGGAATTGTACGAGGAAGTTATGAACTTTTATACATAAGTATTCC
CGTATTATTAATTGCCTATTTCTTTGCTAATCGCTTCACTGTTGCTGGAATGGGTGAAGAATTTTCAGTGAATCTTGGAT
TGAATTATAAACAGGTTGTGAATATTGGGTTAATTATTGTTGCATTAATAACATCCGTTGTTGTATTAACCGTAGGGATG
ATTCCATTCCTTGGATTAATTATTCCGAATATCGTTACGATTTATAAAGGTGATAATTTAAGAGAAAATCTTCCGTATAC
AGCCCTTTTAGGAGCAATATTTGTTCTGTTCTGTGATATTTTAGGGCGTTTAATTATATATCCTTATGAGATAGCGATTG
GTCTCACTGTTGGAGTTATTGGTAGCGGTATTTTTCTTTATTTATTGTTAAGGAGAAAACGTTATGGGTTTTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1X9MAB9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

54.313

98.738

0.536

Multiple sequence alignment