Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   B7941_RS15635 Genome accession   NZ_CP020805
Coordinates   3167888..3168640 (-) Length   250 a.a.
NCBI ID   WP_085342231.1    Uniprot ID   -
Organism   Bacillus velezensis strain 9D-6     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3162888..3173640
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B7941_RS15610 (B7941_15595) mreC 3163324..3164187 (-) 864 WP_085342229.1 rod shape-determining protein MreC -
  B7941_RS15615 (B7941_15600) mreB 3164218..3165231 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  B7941_RS15620 (B7941_15605) radC 3165323..3166018 (-) 696 WP_007408165.1 RadC family protein -
  B7941_RS15625 (B7941_15610) - 3166050..3166619 (-) 570 WP_007408164.1 Maf family protein -
  B7941_RS15630 (B7941_15615) - 3166760..3167761 (-) 1002 WP_085342230.1 SPOR domain-containing protein -
  B7941_RS15635 (B7941_15620) comC 3167888..3168640 (-) 753 WP_085342231.1 prepilin peptidase Machinery gene
  B7941_RS15640 (B7941_15625) - 3168780..3170072 (-) 1293 WP_085342232.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  B7941_RS15645 (B7941_15630) - 3170131..3172773 (-) 2643 WP_020956152.1 valine--tRNA ligase -
  B7941_RS15650 (B7941_15635) - 3173226..3173417 (+) 192 WP_003152639.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27246.02 Da        Isoelectric Point: 9.4293

>NTDB_id=225971 B7941_RS15635 WP_085342231.1 3167888..3168640(-) (comC) [Bacillus velezensis strain 9D-6]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSACSFCRLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTMTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGAVYGMCAAARGRLGKKQPFPFAPAISAGSALSYLYGEELFL
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=225971 B7941_RS15635 WP_085342231.1 3167888..3168640(-) (comC) [Bacillus velezensis strain 9D-6]
GTGCTTTTGATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTGCGAAT
CTCGGTTATTTCGCCGCGTTCAGCCTGTTCGTTTTGCCGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCGTCGTTTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCGAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCA
TGTTTATTCACGGCTGCAGGTATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTGCTCAT
GATTGTTACTATGACGGATCTGCAATATATGCTGATTCCTGACAAGGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGTATGTTTTCTCCGCTGGATTCATGGTATGCAGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAGCCGTATACGGTATGTGCGCCGCAGCCCGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGTGAAGAGCTGTTTTTG
TTTTACATCAAGCTCGCTTCAGGCGGGGCTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

58.468

99.2

0.58

Multiple sequence alignment