Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   B7941_RS14820 Genome accession   NZ_CP020805
Coordinates   3018075..3018842 (-) Length   255 a.a.
NCBI ID   WP_012118014.1    Uniprot ID   A7Z6U2
Organism   Bacillus velezensis strain 9D-6     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 3013075..3023842
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B7941_RS14800 (B7941_14785) - 3013277..3014089 (-) 813 WP_003152991.1 pyruvate, water dikinase regulatory protein -
  B7941_RS14805 (B7941_14790) ccpN 3014115..3014753 (-) 639 WP_003152989.1 transcriptional regulator CcpN -
  B7941_RS14810 (B7941_14795) glyS 3014854..3016893 (-) 2040 WP_085342197.1 glycine--tRNA ligase subunit beta -
  B7941_RS14815 (B7941_14800) glyQ 3016886..3017773 (-) 888 WP_003152984.1 glycine--tRNA ligase subunit alpha -
  B7941_RS14820 (B7941_14805) recO 3018075..3018842 (-) 768 WP_012118014.1 DNA repair protein RecO Machinery gene
  B7941_RS14825 (B7941_14810) - 3018879..3019022 (-) 144 WP_007408286.1 YqzL family protein -
  B7941_RS14830 (B7941_14815) era 3019178..3020083 (-) 906 WP_007408285.1 GTPase Era -
  B7941_RS14835 (B7941_14820) - 3020064..3020474 (-) 411 WP_085342198.1 cytidine deaminase -
  B7941_RS14840 (B7941_14825) - 3020598..3020972 (-) 375 WP_003152974.1 diacylglycerol kinase family protein -
  B7941_RS14845 (B7941_14830) ybeY 3020953..3021426 (-) 474 WP_085342199.1 rRNA maturation RNase YbeY -
  B7941_RS14850 (B7941_14835) - 3021427..3023559 (-) 2133 WP_007408284.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29310.95 Da        Isoelectric Point: 8.5625

>NTDB_id=225964 B7941_RS14820 WP_012118014.1 3018075..3018842(-) (recO) [Bacillus velezensis strain 9D-6]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPMSPQTARLLRLFYYFDIGRLGSVSLKQETKNEIKRVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=225964 B7941_RS14820 WP_012118014.1 3018075..3018842(-) (recO) [Bacillus velezensis strain 9D-6]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACCTTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGGTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATGTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAA
CCAAAAACGAAATTAAACGGGTCATTGATCTGTATTACGAGGAATATTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GATCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z6U2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

88.627

100

0.886

Multiple sequence alignment