Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   B7941_RS13250 Genome accession   NZ_CP020805
Coordinates   2687019..2687627 (+) Length   202 a.a.
NCBI ID   WP_031304205.1    Uniprot ID   -
Organism   Bacillus velezensis strain 9D-6     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2682019..2692627
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B7941_RS13210 (B7941_13200) - 2683072..2683578 (-) 507 WP_012117833.1 PTS glucose transporter subunit IIA -
  B7941_RS13215 (B7941_13205) - 2683717..2684130 (+) 414 WP_017418017.1 Hsp20/alpha crystallin family protein -
  B7941_RS13220 (B7941_13210) - 2684160..2684594 (-) 435 WP_007409493.1 YppG family protein -
  B7941_RS13225 (B7941_13215) - 2684781..2684963 (+) 183 WP_085342137.1 YppF family protein -
  B7941_RS13230 (B7941_13220) - 2685002..2685370 (-) 369 WP_007409492.1 YppE family protein -
  B7941_RS13235 (B7941_13225) - 2685416..2685661 (-) 246 WP_015240083.1 DUF5446 family protein -
  B7941_RS13240 (B7941_13230) sspM 2685867..2685971 (+) 105 WP_003153525.1 acid-soluble spore protein SspM -
  B7941_RS13245 (B7941_13235) - 2686015..2686977 (-) 963 WP_014418234.1 DUF2515 domain-containing protein -
  B7941_RS13250 (B7941_13240) recU 2687019..2687627 (+) 609 WP_031304205.1 Holliday junction resolvase RecU Machinery gene
  B7941_RS13255 (B7941_13245) - 2687666..2690449 (+) 2784 WP_085342138.1 PBP1A family penicillin-binding protein -
  B7941_RS13260 (B7941_13250) - 2690527..2691018 (-) 492 WP_032870046.1 YpoC family protein -
  B7941_RS13265 (B7941_13255) nth 2691015..2691674 (-) 660 WP_007612187.1 endonuclease III -
  B7941_RS13270 (B7941_13260) dnaD 2691693..2692391 (-) 699 WP_003153516.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23652.73 Da        Isoelectric Point: 9.5778

>NTDB_id=225954 B7941_RS13250 WP_031304205.1 2687019..2687627(+) (recU) [Bacillus velezensis strain 9D-6]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWDRKE
NNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=225954 B7941_RS13250 WP_031304205.1 2687019..2687627(+) (recU) [Bacillus velezensis strain 9D-6]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCTCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCCACAACTGACTACAACGGCATTTATAAAGGGCGCTACATTGATTTTGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCACGATCATCAGATTGAGCATATGAAGCAGGTGGTCAGGCAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGACAGAAAGGAG
AACAATGGCAGAAAATCGATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.955

98.515

0.896

Multiple sequence alignment