Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   B7941_RS10695 Genome accession   NZ_CP020805
Coordinates   2115813..2116712 (+) Length   299 a.a.
NCBI ID   WP_039063097.1    Uniprot ID   -
Organism   Bacillus velezensis strain 9D-6     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2110813..2121712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B7941_RS10675 (B7941_10665) - 2111503..2113206 (+) 1704 WP_061581378.1 hypothetical protein -
  B7941_RS10680 (B7941_10670) - 2113203..2113484 (+) 282 WP_015239847.1 FlhB-like flagellar biosynthesis protein -
  B7941_RS10685 (B7941_10675) sucC 2113659..2114816 (+) 1158 WP_003154283.1 ADP-forming succinate--CoA ligase subunit beta -
  B7941_RS10690 (B7941_10680) sucD 2114845..2115747 (+) 903 WP_003154281.1 succinate--CoA ligase subunit alpha -
  B7941_RS10695 (B7941_10685) dprA 2115813..2116712 (+) 900 WP_039063097.1 DNA-processing protein DprA Machinery gene
  B7941_RS10700 (B7941_10690) topA 2116894..2118969 (+) 2076 WP_007409771.1 type I DNA topoisomerase -
  B7941_RS10705 (B7941_10695) trmFO 2119034..2120341 (+) 1308 WP_061890598.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  B7941_RS10710 (B7941_10700) xerC 2120411..2121328 (+) 918 WP_007409774.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 32867.03 Da        Isoelectric Point: 8.4606

>NTDB_id=225950 B7941_RS10695 WP_039063097.1 2115813..2116712(+) (dprA) [Bacillus velezensis strain 9D-6]
MDQASRCLMVCSINQIISPSLLLKWWKADHSLSFLPNPHPLTVLSEGKTAPEAIFREIERKNSELDEVLSDYRREGITVI
PISSSRYPTWLKAIYDPPAVLYAKGNTLLLEKGRKIGIVGTRKPTEDGIKAVGHLSAELSKKGWIIVSGLASGIDGLSHK
ASIRAKGLTIGVIAGGFHHIYPRENLLLAEYMAEHHLLLSEHPPETKPKKWHFPMRNRIISGLSEGIVVVQGKEKSGSLI
TAYQALDQGREVFAVPGSIFNPYSGGPIKLIQEGAKAVLCAEDIDGELTARCVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=225950 B7941_RS10695 WP_039063097.1 2115813..2116712(+) (dprA) [Bacillus velezensis strain 9D-6]
TTGGATCAAGCATCGCGCTGTTTAATGGTCTGCAGTATTAATCAAATCATTTCCCCGTCTCTTCTATTAAAATGGTGGAA
AGCTGATCACTCTCTGTCTTTTTTACCGAATCCGCATCCATTAACTGTTTTATCAGAAGGGAAAACAGCCCCGGAAGCAA
TTTTTCGGGAAATAGAGCGCAAGAATTCGGAACTTGATGAAGTTCTGTCCGATTACCGCCGCGAAGGCATTACTGTCATT
CCGATTTCATCAAGCCGCTATCCAACATGGCTTAAAGCGATTTATGATCCGCCGGCTGTCTTGTATGCAAAAGGGAACAC
GCTGCTTCTTGAAAAAGGCAGAAAAATCGGGATTGTAGGAACGCGGAAACCGACGGAAGACGGAATAAAAGCGGTTGGGC
ATCTTTCCGCCGAACTCTCAAAAAAAGGCTGGATCATTGTAAGCGGGCTTGCATCCGGTATAGACGGATTGTCTCATAAG
GCGAGCATCAGGGCAAAAGGGCTTACGATCGGCGTGATAGCCGGCGGATTCCATCACATCTATCCCCGGGAAAATCTCCT
GTTAGCAGAATACATGGCTGAACACCATCTCCTACTCTCAGAACATCCTCCTGAAACAAAGCCGAAAAAATGGCACTTTC
CGATGAGAAACCGCATAATCAGCGGACTAAGTGAAGGAATTGTGGTCGTGCAGGGAAAAGAAAAAAGCGGTTCATTAATC
ACAGCTTACCAGGCTCTCGATCAAGGCAGAGAGGTATTTGCCGTTCCGGGTTCCATATTTAATCCATATTCCGGAGGACC
TATAAAACTCATTCAAGAAGGGGCGAAAGCTGTATTATGCGCAGAGGATATTGACGGAGAGCTGACCGCCCGATGCGTTC
AGTATACGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

70.234

100

0.702
  dprA Lactococcus lactis subsp. cremoris KW2

42.045

88.294

0.371

Multiple sequence alignment