Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   B7941_RS09810 Genome accession   NZ_CP020805
Coordinates   1900613..1900897 (+) Length   94 a.a.
NCBI ID   WP_003154557.1    Uniprot ID   -
Organism   Bacillus velezensis strain 9D-6     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1895613..1905897
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B7941_RS09790 (B7941_09780) - 1896856..1897764 (+) 909 WP_085341959.1 ketopantoate reductase family protein -
  B7941_RS09795 (B7941_09785) - 1897796..1899028 (-) 1233 WP_007409644.1 aminopeptidase -
  B7941_RS19830 - 1899129..1899263 (-) 135 WP_003154559.1 protein YkpC -
  B7941_RS09800 (B7941_09790) mreBH 1899335..1900342 (-) 1008 WP_003154558.1 cell shape-determining protein MreBH -
  B7941_RS09810 (B7941_09800) abrB 1900613..1900897 (+) 285 WP_003154557.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  B7941_RS09815 (B7941_09805) - 1901070..1902374 (+) 1305 WP_085341960.1 ATP-binding protein -
  B7941_RS09820 (B7941_09810) - 1902376..1903203 (+) 828 WP_015239773.1 gamma-glutamylcyclotransferase -
  B7941_RS09825 (B7941_09815) ktrC 1903244..1903909 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  B7941_RS09830 (B7941_09820) ade 1904057..1905790 (+) 1734 WP_085341961.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10584.45 Da        Isoelectric Point: 5.2271

>NTDB_id=225949 B7941_RS09810 WP_003154557.1 1900613..1900897(+) (abrB) [Bacillus velezensis strain 9D-6]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITPENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=225949 B7941_RS09810 WP_003154557.1 1900613..1900897(+) (abrB) [Bacillus velezensis strain 9D-6]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTGAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACGGGGGAAATTACTCCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543

Multiple sequence alignment