Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   B0D73_RS08485 Genome accession   NZ_CP020776
Coordinates   1542420..1542737 (-) Length   105 a.a.
NCBI ID   WP_002851255.1    Uniprot ID   Q0P8E2
Organism   Campylobacter jejuni strain YH002     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1537420..1547737
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B0D73_RS08465 (B0D73_08460) ctsE 1538289..1539848 (-) 1560 WP_002864463.1 GspE/PulE family protein Machinery gene
  B0D73_RS08470 (B0D73_08465) ctsX 1539838..1540425 (-) 588 WP_002851370.1 membrane protein Machinery gene
  B0D73_RS08475 (B0D73_08470) ctsP 1540429..1541037 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  B0D73_RS08480 (B0D73_08475) ctsD 1541030..1542448 (-) 1419 WP_002851309.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  B0D73_RS08485 (B0D73_08480) ctsR 1542420..1542737 (-) 318 WP_002851255.1 hypothetical protein Machinery gene
  B0D73_RS08490 (B0D73_08485) nifJ 1542761..1546321 (-) 3561 WP_002851382.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  B0D73_RS08495 (B0D73_08490) - 1546414..1547055 (-) 642 WP_002851542.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 12702.64 Da        Isoelectric Point: 5.8722

>NTDB_id=225909 B0D73_RS08485 WP_002851255.1 1542420..1542737(-) (ctsR) [Campylobacter jejuni strain YH002]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKINININ

Nucleotide


Download         Length: 318 bp        

>NTDB_id=225909 B0D73_RS08485 WP_002851255.1 1542420..1542737(-) (ctsR) [Campylobacter jejuni strain YH002]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0P8E2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

98.095

0.981

Multiple sequence alignment