Detailed information NTG0225894

Bioinformatically predicted

Overview

• Name: waaF
• Type: Regulator
• Locus tag: B0D73_RS06005
• Genome accession: NZ_CP020776
• Coordinates: 1087580..1088539 (+)
• Length: 319 a.a.
• NCBI ID: WP_002875425.1
• Uniprot ID: -
• Organism: Campylobacter jejuni strain YH002
• Function: repress natural transformation (predicted from homology) Competence regulation

Genomic Context

Location: 1082580..1093539

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
B0D73_RS05980 (B0D73_05975)	neuC	1083145..1084260 (+)	1116	WP_002858400.1	UDP-N-acetylglucosamine 2-epimerase	-
B0D73_RS05985 (B0D73_05980)	-	1084257..1085099 (+)	843	WP_198157719.1	beta-1,4-N-acetylgalactosaminyltransferase	-
B0D73_RS05990 (B0D73_05985)	-	1085206..1085868 (+)	663	WP_002881429.1	N-acylneuraminate cytidylyltransferase	-
B0D73_RS05995 (B0D73_05990)	-	1085863..1086713 (-)	851	Protein_1102	glycosyltransferase	-
B0D73_RS06000 (B0D73_05995)	waaV	1086697..1087521 (-)	825	WP_002858096.1	glycosyltransferase family 2 protein	-
B0D73_RS06005 (B0D73_06000)	waaF	1087580..1088539 (+)	960	WP_002875425.1	lipopolysaccharide heptosyltransferase II	Regulator
B0D73_RS06010 (B0D73_06005)	gmhA	1088520..1089080 (-)	561	WP_002858021.1	D-sedoheptulose 7-phosphate isomerase	-
B0D73_RS06015 (B0D73_06010)	rfaE1	1089077..1090462 (-)	1386	WP_002858114.1	D-glycero-beta-D-manno-heptose-7-phosphate kinase	-
B0D73_RS06020 (B0D73_06015)	rfaD	1090455..1091408 (-)	954	WP_002858041.1	ADP-glyceromanno-heptose 6-epimerase	-
B0D73_RS06025 (B0D73_06020)	gmhB	1091409..1091969 (-)	561	WP_002853963.1	D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase	-
B0D73_RS06030 (B0D73_06025)	-	1092051..1092353 (+)	303	WP_002852762.1	cytochrome c	-
B0D73_RS06035 (B0D73_06030)	ccoS	1092376..1092582 (-)	207	WP_002852798.1	cbb3-type cytochrome oxidase assembly protein CcoS	-

Sequence

Protein

• Length: 319 a.a.
• Molecular weight: 36734.30 Da
• Isoelectric Point: 10.2412

>NTDB_id=225894 B0D73_RS06005 WP_002875425.1 1087580..1088539(+) (waaF) [Campylobacter jejuni strain YH002]
MKIFIHLPTWLGDTVMASPALYTIKEHFKDAQFILYGSFVSTALFKEFPNSKIIIENKLSRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKYKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLILRNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHDILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHLSAVYKVKTVAIFGPTKFTQTSPWQNENAKLVHLDLACMPCMQKTCPLKHHKCMKDLKPEKVIEQAKNLLKNSHL

Nucleotide

• Length: 960 bp

>NTDB_id=225894 B0D73_RS06005 WP_002875425.1 1087580..1088539(+) (waaF) [Campylobacter jejuni strain YH002]
ATGAAAATTTTTATACATCTTCCCACCTGGTTAGGCGATACGGTAATGGCTTCACCTGCTTTATACACTATAAAAGAACA
TTTTAAAGATGCTCAGTTTATCCTTTATGGTTCTTTTGTTTCTACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACTATCCCGTTATAAACAAGCTCTATCTTTACGCAAAGAACTTGGTAAAATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTCTCTTCTAAGATTATCTTGCATATCCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGTA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAATTCACTTAGTATAAAAGCTCATTTTAAGGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTATCTTAAGAAATGGTAAAAAAATTCTAGGACTCAACCCTGGTGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGATATTTT
AATCTTTGGTGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGACCTATGCACCTAAGTGCGGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATGAAAATGCAAAATTAGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATCTAAAGCCTGAAAAAGTGATAGAACAGGCTAAAAATTTACTTAAAAACTCTCATCTATGA

Domains

Predicted by InterproScan.

• Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9) (94-294)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
waaF	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	100	100	1