Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   B5P37_RS02215 Genome accession   NZ_CP020773
Coordinates   437891..438607 (+) Length   238 a.a.
NCBI ID   WP_085236668.1    Uniprot ID   A0AAC9RSM9
Organism   Staphylococcus lutrae strain ATCC 700373     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 432891..443607
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B5P37_RS02195 (B5P37_02195) - 434190..435005 (+) 816 WP_085236660.1 carbon-nitrogen family hydrolase -
  B5P37_RS02200 (B5P37_02200) - 435854..436420 (+) 567 WP_085236662.1 accessory gene regulator AgrB -
  B5P37_RS02205 (B5P37_02205) - 436422..436556 (+) 135 WP_085236664.1 cyclic lactone autoinducer peptide -
  B5P37_RS02210 (B5P37_02210) - 436585..437910 (+) 1326 WP_085236666.1 GHKL domain-containing protein -
  B5P37_RS02215 (B5P37_02215) agrA 437891..438607 (+) 717 WP_085236668.1 LytTR family DNA-binding domain-containing protein Regulator
  B5P37_RS02220 (B5P37_02220) - 438775..440262 (-) 1488 WP_085236670.1 sucrose-6-phosphate hydrolase -
  B5P37_RS02225 (B5P37_02225) - 440842..441489 (-) 648 WP_085236672.1 redox-sensing transcriptional repressor Rex -
  B5P37_RS02230 (B5P37_02230) - 441642..443600 (+) 1959 WP_085236674.1 ABC-F family ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27961.05 Da        Isoelectric Point: 4.9663

>NTDB_id=225824 B5P37_RS02215 WP_085236668.1 437891..438607(+) (agrA) [Staphylococcus lutrae strain ATCC 700373]
MKILICEDDPKQRERMVSIIENYIMIEEKPMEIEIVTDDPYAILETSKNMTDVGCYFLDIQLESDINGIKLGSEIRKHDP
IGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPDELRTRIIDCLETALKRLDLLTKDHTVETLELKRGSSSVYVSYDDVM
FFESSPKSHRLIAHLDNRQIEFYGNLKELAQLDDRFFRCHNSFVLNRRNISSIDSKERIVYFKNDEFCYVSVRNIKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=225824 B5P37_RS02215 WP_085236668.1 437891..438607(+) (agrA) [Staphylococcus lutrae strain ATCC 700373]
ATGAAAATTTTGATTTGTGAAGATGATCCAAAACAGCGTGAGCGTATGGTCTCTATCATTGAAAATTACATCATGATTGA
AGAAAAACCTATGGAAATTGAAATCGTCACGGATGATCCGTATGCCATTTTGGAAACGTCTAAAAATATGACTGATGTGG
GTTGTTATTTTTTAGATATTCAATTAGAGTCAGACATCAACGGGATTAAACTCGGTAGTGAGATTCGCAAGCACGACCCA
ATTGGAAATATCATCTTTGTCACGAGTCATAGTGAACTCACTTATCTCACTTTTGTTTACAAAGTGGCTGCAATGGATTT
TATTTTTAAAGATGATCCAGATGAACTGAGAACACGGATTATTGACTGTCTAGAAACGGCTTTAAAACGGCTTGATTTGT
TGACTAAAGATCATACTGTTGAGACGTTAGAATTAAAACGTGGGAGCAGCTCTGTTTACGTGAGCTATGATGACGTCATG
TTTTTCGAATCCTCACCTAAATCTCATCGCTTAATTGCTCATTTGGATAATCGACAAATCGAGTTTTATGGCAATCTTAA
AGAGCTTGCACAGTTAGATGATCGTTTCTTTAGATGTCACAACAGTTTTGTTTTAAACAGAAGAAATATTAGTAGCATAG
ACTCAAAAGAACGTATCGTCTATTTTAAAAATGATGAGTTTTGCTACGTCTCTGTAAGAAATATCAAAAAAATTTAA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(151-237)

Response regulator receiver domain (Response_reg)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

84.454

100

0.845

Multiple sequence alignment