Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   HM131_RS09770 Genome accession   NZ_CP020772
Coordinates   2006948..2008678 (+) Length   576 a.a.
NCBI ID   WP_085029579.1    Uniprot ID   A0A1W5ZV35
Organism   Halobacillus mangrovi strain KTB 131     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2001948..2013678
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HM131_RS09750 (HM131_09750) - 2002944..2003543 (+) 600 WP_085029575.1 hypothetical protein -
  HM131_RS09755 (HM131_09755) dxs 2003562..2005451 (+) 1890 WP_085029576.1 1-deoxy-D-xylulose-5-phosphate synthase -
  HM131_RS09760 (HM131_09760) - 2005458..2006276 (+) 819 WP_085029577.1 TlyA family RNA methyltransferase -
  HM131_RS09765 (HM131_09765) ahrC 2006475..2006924 (+) 450 WP_085029578.1 transcriptional regulator AhrC/ArgR -
  HM131_RS09770 (HM131_09770) recN 2006948..2008678 (+) 1731 WP_085029579.1 DNA repair protein RecN Machinery gene
  HM131_RS09775 (HM131_09775) spoIVB 2008903..2010141 (+) 1239 WP_085029580.1 SpoIVB peptidase -
  HM131_RS09780 (HM131_09780) spo0A 2010356..2011135 (+) 780 WP_085029581.1 sporulation transcription factor Spo0A -
  HM131_RS09785 (HM131_09785) - 2011261..2012625 (+) 1365 WP_085029582.1 hypothetical protein -
  HM131_RS09790 (HM131_09790) - 2012631..2012897 (-) 267 WP_085029583.1 hypothetical protein -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 65544.98 Da        Isoelectric Point: 4.7103

>NTDB_id=225799 HM131_RS09770 WP_085029579.1 2006948..2008678(+) (recN) [Halobacillus mangrovi strain KTB 131]
MLTELSIRDFAIIDEISINFKEGLTVLTGETGAGKSIIIDAIQLLSGGRGSVEYVRHGMKKAEIEGLFTVDSDHPVHQKG
SQFGVDINDDGMVVLHRTITHQGKSICRVNGKLVTLGILKEFGQTLIDIHSQHETQSLMDPDRHIELLDLFASSELDTSM
KEYQSVFENYRSLLKRYKELSENEQEMAQRLDLLEFQLRELQSAELEPKEDEELTEERNKLMNYEKIYQGIHDAYNSLYG
EQKGLDWLSHAMTSVESIADYDDRLSKMSEELSNSYYVIEEMTFQLSSQMAELEFDPERLNQIESRLNELNRLMKKYGAS
VEEMLEYSSRIEEEIDEIRNKDSHLSKMEKQINELGQDAVLEAKNIHDIRSKASDTLSEYIHEELKGLYLEKASFAVDIQ
LKEGRSNSPEFDGIPVHLQFNGFDIVKFLITTNPGEPLKEIHKIASGGEMSRIMLALKTIFSRHQGVTSVIFDEVDTGVS
GRVAQAIAEKIHGISIGSQVLCISHLPQVAAMADTHLRIEKRVDNDRTFTGVTELKYEEKADELSRMMTGAELTETTLEH
ARELLKLAEKHKQHQI

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=225799 HM131_RS09770 WP_085029579.1 2006948..2008678(+) (recN) [Halobacillus mangrovi strain KTB 131]
ATGTTAACTGAATTATCTATACGCGACTTTGCTATTATTGATGAGATATCCATCAATTTTAAAGAAGGATTAACTGTCCT
AACCGGGGAAACAGGGGCAGGTAAATCAATTATTATTGATGCTATTCAACTTTTGTCAGGCGGACGAGGTTCAGTGGAAT
ATGTGCGCCATGGGATGAAAAAAGCTGAAATTGAAGGGTTGTTCACTGTTGATTCAGATCACCCGGTCCACCAGAAAGGA
AGTCAGTTTGGTGTCGACATAAATGATGACGGAATGGTTGTTCTCCATCGGACCATTACCCATCAAGGTAAAAGCATCTG
TCGTGTAAACGGAAAGTTAGTTACTTTAGGCATACTTAAAGAGTTTGGACAGACTCTTATTGATATCCATAGTCAACATG
AAACTCAGTCTCTTATGGACCCGGATAGACACATAGAGCTCTTAGATCTTTTTGCTTCCTCTGAGCTGGATACTTCTATG
AAGGAATATCAATCGGTTTTTGAAAACTATCGGTCTTTACTAAAGCGTTATAAAGAACTGAGTGAAAATGAGCAAGAAAT
GGCTCAACGATTAGATTTATTGGAGTTTCAGCTTCGTGAATTGCAGTCTGCTGAACTTGAGCCTAAAGAGGATGAAGAAT
TAACTGAGGAAAGAAATAAGTTAATGAATTACGAGAAAATTTATCAAGGTATCCACGATGCTTACAACTCCTTGTATGGT
GAACAGAAAGGGCTGGACTGGTTAAGTCATGCCATGACCTCTGTTGAGAGTATTGCTGATTATGATGATAGGCTTTCTAA
AATGTCTGAAGAACTGTCTAATTCTTATTACGTGATCGAAGAAATGACTTTCCAGCTTAGCAGTCAAATGGCAGAACTTG
AATTTGATCCTGAGCGGTTGAACCAAATTGAATCCCGGCTCAATGAGTTGAACCGTTTAATGAAAAAATATGGAGCATCT
GTAGAGGAAATGCTTGAATATTCTTCTCGTATTGAAGAAGAGATTGATGAGATTCGAAATAAAGACTCCCATTTGAGTAA
AATGGAAAAACAAATAAACGAATTGGGCCAAGATGCTGTGTTAGAAGCTAAAAATATTCATGATATTCGTTCAAAAGCTT
CCGATACGCTTTCAGAATACATTCATGAAGAACTGAAGGGTCTTTATTTGGAAAAAGCTTCTTTTGCGGTGGACATCCAA
CTTAAAGAGGGACGCTCAAACTCACCTGAATTTGATGGAATTCCTGTACACCTTCAATTCAATGGGTTTGACATCGTTAA
ATTTCTCATAACTACCAACCCTGGTGAGCCTTTAAAAGAAATACATAAAATAGCTTCTGGCGGTGAAATGTCTCGTATAA
TGCTTGCACTTAAAACGATATTCAGCAGACATCAAGGAGTAACCAGTGTCATATTTGACGAAGTCGATACTGGTGTGAGC
GGGCGAGTCGCTCAAGCGATTGCTGAAAAAATCCATGGGATATCCATTGGTTCCCAAGTGCTATGTATTTCTCATCTTCC
TCAAGTTGCCGCTATGGCTGATACGCATCTTCGAATTGAAAAACGTGTCGATAATGACAGAACTTTCACCGGTGTTACCG
AACTTAAATATGAAGAAAAAGCTGATGAGTTGTCGCGGATGATGACAGGCGCAGAATTAACCGAAACAACTCTTGAACAT
GCACGAGAGCTTTTAAAACTTGCTGAAAAGCATAAGCAGCATCAAATATAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1W5ZV35

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

56.62

99.653

0.564

Multiple sequence alignment