Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   B7492_RS23050 Genome accession   NZ_CP020743
Coordinates   4402372..4403118 (-) Length   248 a.a.
NCBI ID   WP_002088669.1    Uniprot ID   R8MN78
Organism   Bacillus mycoides strain Gnyt1     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 4397372..4408118
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B7492_RS23030 (B7492_23010) dnaG 4398099..4399901 (-) 1803 WP_002067179.1 DNA primase -
  B7492_RS35270 - 4399983..4400126 (-) 144 WP_162836445.1 hypothetical protein -
  B7492_RS23040 (B7492_23020) - 4400791..4401603 (-) 813 WP_085312390.1 pyruvate, water dikinase regulatory protein -
  B7492_RS23045 (B7492_23025) - 4401633..4402265 (-) 633 WP_088034669.1 helix-turn-helix transcriptional regulator -
  B7492_RS23050 (B7492_23030) recO 4402372..4403118 (-) 747 WP_002088669.1 DNA repair protein RecO Machinery gene
  B7492_RS23055 (B7492_23035) - 4403152..4403295 (-) 144 WP_000883924.1 YqzL family protein -
  B7492_RS23060 (B7492_23040) era 4403472..4404377 (-) 906 WP_002088672.1 GTPase Era -
  B7492_RS23065 (B7492_23045) - 4404370..4404768 (-) 399 WP_002015184.1 cytidine deaminase -
  B7492_RS23070 (B7492_23050) - 4404868..4405221 (-) 354 WP_002143170.1 diacylglycerol kinase family protein -
  B7492_RS23075 (B7492_23055) ybeY 4405218..4405688 (-) 471 WP_002165062.1 rRNA maturation RNase YbeY -
  B7492_RS23080 (B7492_23060) - 4405685..4407829 (-) 2145 WP_085312392.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 28649.18 Da        Isoelectric Point: 7.7708

>NTDB_id=225692 B7492_RS23050 WP_002088669.1 4402372..4403118(-) (recO) [Bacillus mycoides strain Gnyt1]
MFQKVEGIVIRTTDYGETNKIVTIYSREFGKVSAMARGAKKPKSRLAAISQLMTHGHFLIQMGSGLGTLQQGEIISSMKE
IREDIFLTAYASFIIELTDKATEDKKHNPYLFEMLYQTLHYMCEGVDPEVLSLIYQTKMLPVLGMHPYFDTCAICHQETD
FVAFSVREGGFLCSRHAEQDPYRIPVGEAVHKLLRLFFHFDLHRLGNVSVKDSTKKQMRTVLNTYYDEYCGIYLKTRRFL
EQLDKFQI

Nucleotide


Download         Length: 747 bp        

>NTDB_id=225692 B7492_RS23050 WP_002088669.1 4402372..4403118(-) (recO) [Bacillus mycoides strain Gnyt1]
ATGTTTCAAAAAGTTGAGGGCATTGTTATCCGTACGACAGATTACGGAGAAACAAATAAGATTGTTACAATATACTCACG
GGAATTTGGTAAGGTAAGTGCAATGGCAAGAGGGGCGAAAAAGCCGAAGAGTCGGTTAGCAGCTATTTCGCAACTTATGA
CACATGGTCATTTTCTTATTCAAATGGGATCTGGACTTGGAACTTTGCAACAAGGCGAGATTATTTCATCTATGAAAGAA
ATTCGCGAGGATATATTTTTAACTGCTTATGCATCATTTATTATCGAATTAACTGATAAAGCAACAGAAGATAAGAAGCA
TAATCCGTATTTATTTGAAATGTTATATCAAACGTTGCATTATATGTGTGAGGGTGTTGACCCAGAAGTATTATCATTAA
TTTATCAAACGAAAATGCTTCCGGTATTAGGGATGCACCCGTACTTTGATACATGTGCTATTTGTCATCAAGAAACAGAT
TTTGTCGCCTTCTCTGTCAGGGAAGGCGGTTTTCTGTGCTCTCGTCATGCGGAACAAGATCCGTATCGTATTCCGGTGGG
AGAGGCTGTTCATAAATTATTACGTCTCTTTTTTCATTTTGATTTACACCGACTCGGTAATGTATCGGTGAAGGATAGTA
CAAAAAAACAAATGCGCACAGTATTGAATACATATTATGATGAATATTGTGGGATTTATTTGAAAACAAGGCGTTTCTTG
GAACAACTTGATAAGTTTCAAATATAA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB R8MN78

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

55.466

99.597

0.552

Multiple sequence alignment