Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   B7492_RS07095 Genome accession   NZ_CP020743
Coordinates   1348144..1348467 (-) Length   107 a.a.
NCBI ID   WP_002011473.1    Uniprot ID   A0A366GDN4
Organism   Bacillus mycoides strain Gnyt1     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1343144..1353467
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B7492_RS07070 (B7492_07070) - 1343320..1344606 (+) 1287 WP_085309859.1 D-alanyl-D-alanine carboxypeptidase family protein -
  B7492_RS07075 (B7492_07075) sipW 1344804..1345373 (+) 570 WP_085309861.1 signal peptidase I SipW -
  B7492_RS07080 (B7492_07080) - 1345437..1346024 (+) 588 WP_085309863.1 CalY family protein -
  B7492_RS07085 (B7492_07085) - 1346186..1347019 (+) 834 WP_085309865.1 DUF4047 domain-containing protein -
  B7492_RS07090 (B7492_07090) calY 1347468..1348061 (+) 594 WP_085309867.1 biofilm matrix protein CalY -
  B7492_RS07095 (B7492_07095) sinR 1348144..1348467 (-) 324 WP_002011473.1 helix-turn-helix domain-containing protein Regulator
  B7492_RS07100 (B7492_07100) - 1348547..1348681 (-) 135 WP_000276222.1 anti-repressor SinI family protein -
  B7492_RS07105 (B7492_07105) inhA1 1349024..1351411 (+) 2388 WP_085309869.1 M6 family metalloprotease immune inhibitor InhA1 -
  B7492_RS07110 (B7492_07110) - 1351569..1352936 (+) 1368 WP_085309872.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12304.07 Da        Isoelectric Point: 7.2050

>NTDB_id=225675 B7492_RS07095 WP_002011473.1 1348144..1348467(-) (sinR) [Bacillus mycoides strain Gnyt1]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTTESHLDSEWTQLV
KDAMSSGVSKEQFREFLEFTQWKKNQQ

Nucleotide


Download         Length: 324 bp        

>NTDB_id=225675 B7492_RS07095 WP_002011473.1 1348144..1348467(-) (sinR) [Bacillus mycoides strain Gnyt1]
ATGATAGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGCATTTCATTAACAGAACTCGCCGAAAAAGCTGGTGTCGC
TAAATCTTACATTAGTTCTATAGAACGGAATTTACAAAAAAACCCTTCTATTCAGTTTCTTGAAAAAATTGCAGCTGTTC
TACAAATTCCAGTTGATACTTTACTTCACGATGAAACAACAACGGAAAGTCATTTAGACTCCGAATGGACACAGCTCGTT
AAAGATGCGATGAGCTCTGGTGTCTCAAAAGAACAGTTTCGTGAATTTCTCGAATTTACACAATGGAAGAAAAATCAACA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A366GDN4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

66.972

100

0.682

Multiple sequence alignment