Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   SE_RS01300 Genome accession   NC_004461
Coordinates   287683..289056 (+) Length   457 a.a.
NCBI ID   WP_002445730.1    Uniprot ID   A0A4Y7VQ23
Organism   Staphylococcus epidermidis ATCC 12228     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 282683..294056
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE_RS01280 (SE0284) - 282683..283144 (+) 462 WP_001832288.1 CtsR family transcriptional regulator -
  SE_RS01285 (SE0285) - 283165..283728 (+) 564 WP_002469112.1 UvrB/UvrC motif-containing protein -
  SE_RS01290 (SE0286) - 283718..284725 (+) 1008 WP_002438663.1 protein arginine kinase -
  SE_RS01295 (SE0287) - 284739..287192 (+) 2454 WP_002445729.1 ATP-dependent Clp protease ATP-binding subunit -
  SE_RS01300 (SE0288) radA 287683..289056 (+) 1374 WP_002445730.1 DNA repair protein RadA Machinery gene
  SE_RS01305 (SE0289) - 289110..290168 (+) 1059 WP_001832313.1 PIN/TRAM domain-containing protein -
  SE_RS01310 (SE0290) gltX 290578..292032 (+) 1455 WP_002438667.1 glutamate--tRNA ligase -
  SE_RS01315 (SE0291) cysE 292417..293046 (+) 630 WP_002438669.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 50303.88 Da        Isoelectric Point: 7.5278

>NTDB_id=22566 SE_RS01300 WP_002445730.1 287683..289056(+) (radA) [Staphylococcus epidermidis ATCC 12228]
MAKKKVIFECMACGYQSPKWMGKCPNCGAWNQMEEIVEKVAHPKHGVKTKETAGKVQKLNSVKHEATPRLLTESKEFNRV
LGGGIVSGSLVLIGGDPGIGKSTLLLQICAALSQNKNVLYITGEESINQTKLRADRLEEDSSHLNVLAETDLEVIHQTVK
EERPDLLVVDSIQTIYHPEISSAPGSVSQVRESTQSLMNIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGDE
HHAYRILRAVKNRFGSTNEMGIFEMKQSGLKGVLNPSEMFLEERSTNVPGSTIVPTMEGTRPLLIEVQALVTPTTFNNPR
RMATGIDHNRLSLLMAVLEKKENYLLQQQDAYIKVAGGVKLTEPAVDLSIIVATASSFKDQAVDGLDCFVGEVGLTGEVR
RVSRIEQRVQEATKLGFKRAIIPQTNIGGWTFPEGIQVVGVSSVHEALKYALHSKQR

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=22566 SE_RS01300 WP_002445730.1 287683..289056(+) (radA) [Staphylococcus epidermidis ATCC 12228]
ATGGCCAAGAAAAAAGTAATATTCGAATGTATGGCATGTGGCTATCAATCTCCTAAGTGGATGGGCAAGTGCCCTAACTG
CGGTGCGTGGAATCAAATGGAAGAAATAGTAGAAAAGGTTGCTCATCCTAAACATGGTGTAAAAACAAAAGAAACAGCAG
GTAAGGTACAAAAGTTAAATAGTGTTAAGCATGAAGCTACCCCTAGATTACTTACAGAATCAAAGGAATTTAACCGTGTT
TTAGGTGGAGGTATTGTAAGTGGTTCGTTAGTACTAATAGGTGGAGACCCAGGTATTGGTAAGTCGACTTTATTGCTACA
AATTTGTGCTGCGCTGTCACAAAATAAGAATGTTTTATATATTACTGGTGAGGAATCTATTAATCAAACTAAGTTGCGCG
CTGATCGTTTAGAAGAAGATTCTAGTCATCTTAATGTTTTAGCTGAAACTGATTTAGAAGTGATACATCAAACTGTAAAA
GAAGAGAGACCTGACTTACTTGTTGTTGATTCGATTCAAACAATCTATCATCCGGAAATTAGTTCCGCACCTGGATCGGT
ATCACAAGTAAGAGAGAGTACGCAGAGTTTAATGAACATTGCTAAACAAATGAATATTGCCACATTTATTGTGGGACACG
TAACAAAAGAAGGACAAATCGCCGGACCAAGATTATTGGAACATATGGTTGATACAGTTCTTTATTTTGAAGGAGATGAG
CATCACGCATATCGTATCCTTAGAGCAGTAAAAAATAGATTTGGTTCTACAAATGAGATGGGGATTTTCGAAATGAAGCA
AAGTGGATTAAAAGGTGTACTTAATCCTTCTGAAATGTTTTTAGAAGAACGTTCTACAAATGTTCCGGGCTCTACAATCG
TCCCCACTATGGAAGGAACAAGACCACTACTCATTGAAGTCCAAGCGCTTGTTACACCAACAACATTTAATAATCCTAGA
CGAATGGCTACAGGTATAGATCATAATCGATTAAGTTTACTTATGGCGGTTCTAGAAAAAAAGGAAAACTATTTACTCCA
ACAACAAGATGCCTATATTAAAGTAGCAGGTGGCGTCAAATTAACAGAACCTGCTGTTGATTTAAGCATTATTGTTGCGA
CAGCTTCAAGTTTTAAAGATCAAGCTGTTGATGGATTAGATTGTTTTGTGGGTGAAGTTGGATTAACAGGTGAAGTACGC
AGAGTATCTCGCATAGAGCAACGTGTTCAAGAAGCGACCAAACTAGGGTTTAAAAGAGCTATTATTCCACAGACAAATAT
TGGAGGTTGGACATTCCCAGAAGGCATCCAAGTCGTTGGTGTTTCATCAGTACATGAAGCTTTGAAATATGCATTACATT
CAAAACAGCGATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(71-218)

Subunit ChlI of Mg-chelatase (ChlI)

(353-426)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Y7VQ23

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

66.013

100

0.663
  radA Streptococcus pneumoniae Rx1

60.579

98.249

0.595
  radA Streptococcus pneumoniae D39

60.579

98.249

0.595
  radA Streptococcus pneumoniae R6

60.579

98.249

0.595
  radA Streptococcus pneumoniae TIGR4

60.579

98.249

0.595
  radA Streptococcus mitis NCTC 12261

60.579

98.249

0.595
  radA Streptococcus mitis SK321

60.579

98.249

0.595

Multiple sequence alignment