Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   BSR26_RS02210 Genome accession   NZ_CP020731
Coordinates   447975..449768 (-) Length   597 a.a.
NCBI ID   WP_050891317.1    Uniprot ID   -
Organism   Leuconostoc mesenteroides subsp. mesenteroides strain FM06     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 442975..454768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR26_RS02185 (BSR26_02175) pheS 444348..445397 (-) 1050 WP_025267790.1 phenylalanine--tRNA ligase subunit alpha -
  BSR26_RS02190 (BSR26_02180) - 445701..446069 (-) 369 WP_050891314.1 winged helix-turn-helix transcriptional regulator -
  BSR26_RS02195 (BSR26_02185) - 446089..447018 (-) 930 WP_050891315.1 phosphoglycerate dehydrogenase -
  BSR26_RS02200 (BSR26_02190) - 447018..447458 (-) 441 WP_050891316.1 nucleoside 2-deoxyribosyltransferase -
  BSR26_RS02205 (BSR26_02195) - 447475..447870 (-) 396 WP_041775149.1 cytidine deaminase -
  BSR26_RS02210 (BSR26_02200) pepF 447975..449768 (-) 1794 WP_050891317.1 oligoendopeptidase F Regulator
  BSR26_RS02215 (BSR26_02205) - 449826..450491 (-) 666 WP_311317207.1 hypothetical protein -
  BSR26_RS10775 - 450488..450847 (-) 360 WP_311317208.1 competence protein CoiA family protein -
  BSR26_RS02220 (BSR26_02210) - 450889..452334 (-) 1446 WP_048592758.1 ABC transporter substrate-binding protein/permease -
  BSR26_RS02225 (BSR26_02215) - 452401..453153 (-) 753 WP_025267784.1 amino acid ABC transporter ATP-binding protein -
  BSR26_RS02230 (BSR26_02220) - 453150..454592 (-) 1443 WP_050891318.1 ABC transporter substrate-binding protein/permease -

Sequence

Protein


Download         Length: 597 a.a.        Molecular weight: 67888.65 Da        Isoelectric Point: 4.7108

>NTDB_id=225580 BSR26_RS02210 WP_050891317.1 447975..449768(-) (pepF) [Leuconostoc mesenteroides subsp. mesenteroides strain FM06]
MSEKQLLRNQVPENLTWDLSSIFPTDEAWETAFNETRKSAQELSKYAGHVGDSADVLKEALEADLAVERQFEKVYVYAHQ
IYDQDTTNQKYSAYNARVQSLYAELSANTAFFQPEVLALSNEKLDAYLATAGLKKYAHFFDVLKARKPHTLPAEQEALLA
GASDIFNASEQTFGALDNSDIVFGDVHTETGEIVPLTNGLYSLLLESKDRSLREEAFTTLYDSYIALQNTFASTLSSHVK
GHNFLAKTRHYDSARQAAVTANDIPESVFETLTKTVDANLPLLHRFVSLRRKILNVDDVHSYDLYVPLVDEINFEVTYEK
AKDIVLAALAPLGEDYIAIVQKAFDERWIDVVENKGKRSGAYSSGSYDTKPFILLNWQNNLNNVYTLAHEMGHSVHSYFT
RHNQEYHYGDYPIFLAEIASTTNEGLLTDYLLKTNDDPKFQAYVLNQYLDGFKGTVFRQTQFAEFEQWIHEQSAAGVALT
ADEMSRFYGSLNQKFYGSDLFPGEAIAYEWARIPHFYYNFYVYQYSTGEAAATTLAERILTQNGAEDYKNYLKAGNSDYA
LNVIKKAGVNMSQPDYLNEAFKVFEERLNEFEKIMLK

Nucleotide


Download         Length: 1794 bp        

>NTDB_id=225580 BSR26_RS02210 WP_050891317.1 447975..449768(-) (pepF) [Leuconostoc mesenteroides subsp. mesenteroides strain FM06]
ATGTCTGAAAAACAACTATTACGTAATCAAGTACCAGAAAATCTTACATGGGATCTATCCTCAATTTTTCCGACAGATGA
AGCTTGGGAAACCGCTTTTAATGAGACACGAAAGTCTGCACAAGAATTAAGCAAGTACGCTGGACACGTCGGGGATTCTG
CGGATGTTTTGAAAGAAGCCTTAGAAGCAGATTTAGCAGTAGAACGTCAATTCGAAAAAGTCTACGTATATGCTCATCAA
ATTTATGATCAAGATACAACTAATCAAAAGTATAGTGCGTATAATGCTCGTGTTCAAAGCTTATATGCTGAATTAAGTGC
GAATACAGCCTTCTTCCAGCCTGAAGTGTTAGCATTGTCAAACGAGAAACTAGATGCATACTTAGCGACAGCTGGTTTGA
AAAAATATGCACACTTCTTTGACGTTTTAAAAGCTCGTAAACCGCATACGCTACCTGCAGAACAGGAAGCCTTACTAGCA
GGAGCAAGCGACATCTTTAATGCTTCTGAACAGACTTTTGGTGCATTGGATAATTCAGATATTGTTTTTGGTGATGTCCA
TACTGAAACAGGTGAAATTGTGCCATTGACAAATGGACTCTATTCATTGTTGTTGGAGTCTAAAGATCGTTCATTGCGTG
AGGAAGCGTTCACAACGCTTTATGATAGTTATATTGCTTTGCAAAATACATTTGCCTCAACGTTATCTTCACATGTCAAG
GGACATAACTTTTTGGCTAAAACTCGTCACTATGATTCAGCTCGTCAAGCTGCTGTAACAGCCAATGATATTCCTGAGTC
AGTTTTTGAAACATTAACCAAAACAGTTGATGCCAATCTGCCATTACTACACCGTTTTGTATCATTACGTAGAAAAATTC
TTAATGTTGATGATGTACACTCTTACGATTTATATGTACCACTTGTTGATGAAATTAATTTTGAAGTAACATATGAAAAG
GCAAAAGACATTGTTTTGGCGGCTTTGGCACCGTTAGGCGAGGATTACATCGCTATTGTTCAAAAGGCTTTTGATGAACG
ATGGATTGATGTGGTTGAAAATAAGGGGAAGCGTAGTGGCGCTTATTCAAGCGGTTCGTATGATACAAAACCATTCATTT
TACTTAACTGGCAGAACAATTTGAATAATGTTTATACGTTGGCTCATGAAATGGGACATTCGGTTCATTCATACTTTACA
CGCCATAATCAAGAGTATCATTATGGTGATTATCCAATATTCTTAGCTGAAATTGCTTCAACTACTAATGAGGGGTTATT
AACGGATTATTTGCTAAAGACAAATGATGATCCCAAGTTTCAGGCCTACGTATTGAACCAGTATTTAGATGGATTCAAAG
GAACAGTTTTCCGCCAAACTCAATTTGCTGAGTTTGAGCAATGGATTCATGAACAAAGTGCGGCTGGAGTGGCTTTGACA
GCTGATGAGATGAGTAGATTCTATGGATCGTTAAATCAAAAGTTTTATGGATCGGACTTATTTCCAGGTGAAGCTATTGC
TTATGAATGGGCACGTATTCCACATTTTTATTACAATTTCTATGTTTATCAATATTCGACAGGCGAAGCTGCTGCCACAA
CTTTGGCAGAACGCATACTAACACAAAATGGTGCTGAGGATTATAAGAATTATCTGAAAGCAGGTAATTCAGATTATGCT
TTAAATGTGATCAAAAAAGCTGGCGTTAACATGAGTCAACCGGACTATTTAAATGAAGCTTTCAAAGTGTTTGAAGAGCG
ATTAAATGAGTTTGAAAAAATCATGTTAAAGTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(204-582)

Oligopeptidase F (Peptidase_M3_N)

(115-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

52.614

99.33

0.523

Multiple sequence alignment